Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
pathoplexus
/
example_data
Public
Notifications
You must be signed in to change notification settings
Fork
1
Star
3
Code
Issues
0
Pull requests
1
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
Commits
Branch selector
main
User selector
All users
Datepicker
All time
Commit history
Commits on Sep 25, 2026
Update example metadata files with templates (#26)
Show description for 92f75d9
maverbiest
authored
92f75d9
View commit details
Copy full SHA for 92f75d9
Browse repository at this point
Commits on Sep 22, 2026
Merge pull request #25 from pathoplexus/west-nile-rawreads
Show description for 23fb76d
maverbiest
authored
23fb76d
View commit details
Copy full SHA for 23fb76d
Browse repository at this point
Adding raw reads
maverbiest
committed
a1d167b
View commit details
Copy full SHA for a1d167b
Browse repository at this point
Commits on Aug 15, 2026
Merge pull request #23 from pathoplexus/zika-test-data
Show description for 9beee95
arthurshem86
authored
9beee95
View commit details
Copy full SHA for 9beee95
Browse repository at this point
Commits on Aug 12, 2026
updated host info
arthurshem86
committed
99931ec
View commit details
Copy full SHA for 99931ec
Browse repository at this point
corrected host scientific name
arthurshem86
committed
9a1e97f
View commit details
Copy full SHA for 9a1e97f
Browse repository at this point
Commits on Aug 3, 2026
Adding test data for zika virus
arthurshem86
committed
8a8a527
View commit details
Copy full SHA for 8a8a527
Browse repository at this point
Commits on May 26, 2026
Merge pull request #22 from pathoplexus/use-host-field
Show description for a6b8985
maverbiest
authored
a6b8985
View commit details
Copy full SHA for a6b8985
Browse repository at this point
Update example data to use 'host' instead of 'hostTaxonId', 'hostNameScientific'
maverbiest
committed
dc4e405
View commit details
Copy full SHA for dc4e405
Browse repository at this point
Commits on May 9, 2026
Merge pull request #20 from pathoplexus/andes-virus-example-data
Show description for 6e6209c
theosanderson
authored
6e6209c
View commit details
Copy full SHA for 6e6209c
Browse repository at this point
Commits on May 8, 2026
Add substitutions to Andes example sequences
theosanderson
committed
021d0c7
View commit details
Copy full SHA for 021d0c7
Browse repository at this point
Use synthetic Andes example metadata
theosanderson
committed
b9b346c
View commit details
Copy full SHA for b9b346c
Browse repository at this point
Add Andes virus example data
theosanderson
committed
c61e67b
View commit details
Copy full SHA for c61e67b
Browse repository at this point
Commits on Mar 12, 2026
Merge pull request #17 from pathoplexus/exam-D
Show description for 6516be5
emmahodcroft
authored
6516be5
View commit details
Copy full SHA for 6516be5
Browse repository at this point
Merge pull request #18 from pathoplexus/exam-YF
Show description for 93c7e66
emmahodcroft
authored
93c7e66
View commit details
Copy full SHA for 93c7e66
Browse repository at this point
Commits on Mar 11, 2026
Merge pull request #15 from pathoplexus/add_more_viruses
Show description for c66f352
emmahodcroft
authored
c66f352
View commit details
Copy full SHA for c66f352
Browse repository at this point
add Hogwarts to admin2 level to make clear demo data
emmahodcroft
committed
0ba55fe
View commit details
Copy full SHA for 0ba55fe
Browse repository at this point
adding some example files for new org 2
emmahodcroft
committed
10927af
View commit details
Copy full SHA for 10927af
Browse repository at this point
new example files
emmahodcroft
committed
fa3da28
View commit details
Copy full SHA for fa3da28
Browse repository at this point
Commits on Dec 3, 2025
Update cchf example (#16)
Show description for 21900e7
anna-parker
authored
21900e7
View commit details
Copy full SHA for 21900e7
Browse repository at this point
Commits on Jul 4, 2025
add examples
anna-parker
committed
7e05e9b
View commit details
Copy full SHA for 7e05e9b
Browse repository at this point
Commits on Apr 30, 2025
Merge pull request #14 from pathoplexus/remove_another_sapce
Show description for b888c88
theosanderson
authored
b888c88
View commit details
Copy full SHA for b888c88
Browse repository at this point
remove another space
theosanderson
authored
c657eaa
View commit details
Copy full SHA for c657eaa
Browse repository at this point
Commits on Apr 22, 2025
Merge pull request #13 from pathoplexus/whitespace
Show description for 9a3df5a
theosanderson
authored
9a3df5a
View commit details
Copy full SHA for 9a3df5a
Browse repository at this point
whitespace
theosanderson
authored
e834b87
View commit details
Copy full SHA for e834b87
Browse repository at this point
Commits on Feb 18, 2025
Merge pull request #12 from pathoplexus/theosanderson-patch-3
Show description for 0f77447
theosanderson
authored
0f77447
View commit details
Copy full SHA for 0f77447
Browse repository at this point
Update README.md
theosanderson
authored
76d95fe
View commit details
Copy full SHA for 76d95fe
Browse repository at this point
Merge pull request #11 from pathoplexus/easier
Show description for 6170615
theosanderson
authored
6170615
View commit details
Copy full SHA for 6170615
Browse repository at this point
update
theosanderson
authored
4373f59
View commit details
Copy full SHA for 4373f59
Browse repository at this point
Move out many of the examples to simplify user experience
theosanderson
authored
91de32a
View commit details
Copy full SHA for 91de32a
Browse repository at this point
Merge pull request #10 from pathoplexus/theosanderson-patch-2
Show description for 8cb1529
theosanderson
authored
8cb1529
View commit details
Copy full SHA for 8cb1529
Browse repository at this point
Update README.md
theosanderson
authored
9f67b27
View commit details
Copy full SHA for 9f67b27
Browse repository at this point
Commits on Jan 21, 2025
Merge pull request #9 from pathoplexus/add-cchfv-meta-tsvgz
Show description for a0d8592
fhennig
authored
a0d8592
View commit details
Copy full SHA for a0d8592
Browse repository at this point
Add missin file
fhennig
committed
beda834
View commit details
Copy full SHA for beda834
Browse repository at this point
feat(example_files): add cchfv metadata in excel format and in all supported zip formats (#8)
anna-parker
authored
d976f92
View commit details
Copy full SHA for d976f92
Browse repository at this point
Previous
Next
You can’t perform that action at this time.