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@sanger Wellcome Sanger Institute - PSD

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    52 repositories

    • limber

      Public
      A config-driven LIMS built on Sequencescape, primarily for running library preparation pipelines in the laboratory
      railsvuelims
      railsvuelimssequencescape-client-application
      Ruby
      •
      MIT License
      •8•5•61•17•Updated Oct 6, 2026Oct 6, 2026

    • sequencescape

      Public
      Web based LIMS
      rubyrailsscience
      rubyrailssciencebiologylims
      Ruby
      •
      MIT License
      •34•111•138•23•Updated Oct 6, 2026Oct 6, 2026

    • sprint

      Public
      Simple print service
      CSS
      •
      MIT License
      •1•1•0•0•Updated Oct 6, 2026Oct 6, 2026

    • stan-core

      Public
      Java
      •
      MIT License
      •2•0•6•1•Updated Oct 5, 2026Oct 5, 2026

    • stan-client

      Public
      Front-end code for the Spatial Genomics LIMS
      TypeScript
      •
      MIT License
      •0•1•19•21•Updated Oct 5, 2026Oct 5, 2026

    • janitor

      Public
      A Python application which hosts task scripts for data management and clean up tasks, running them on a schedule.
      Python
      •
      MIT License
      •0•0•2•10•Updated Oct 5, 2026Oct 5, 2026

    • quanthub

      Public
      Provides parsing and visualisation of the concentration information from qPCR and plate readers
      JavaScript
      •
      MIT License
      •4•2•2•19•Updated Oct 4, 2026Oct 4, 2026

    • traction-ui

      Public
      JavaScript
      •
      MIT License
      •6•2•24•5•Updated Oct 4, 2026Oct 4, 2026

    • traction-service

      Public
      Ruby on Rails exposing a RESTful API for a Long Read LIMS
      Ruby
      •
      MIT License
      •5•5•15•5•Updated Oct 2, 2026Oct 2, 2026

    • print_my_barcode

      Public
      Barcode printing service
      HTML
      •
      MIT License
      •5•2•2•3•Updated Oct 1, 2026Oct 1, 2026

    • event_warehouse

      Public
      A simple message queue driven event store
      rubyrails
      rubyrails
      Ruby
      •
      MIT License
      •4•0•5•6•Updated Oct 1, 2026Oct 1, 2026

    • sm_workflow_lims

      Public
      A small LIMS to assist with managing workflows
      rubyrails
      rubyrails
      Ruby
      •
      MIT License
      •6•2•8•24•Updated Oct 1, 2026Oct 1, 2026

    • labwhere

      Public
      A tool for tracking uniquely barcoded labware
      Ruby
      •
      MIT License
      •10•3•7•7•Updated Oct 1, 2026Oct 1, 2026

    • baracoda

      Public
      Generate barcodes on demand
      Python
      •
      MIT License
      •1•0•10•15•Updated Oct 1, 2026Oct 1, 2026

    • warren

      Public
      Gem to handle rabbitMQ integrations
      Ruby
      •
      Other
      •0•1•1•10•Updated Oct 1, 2026Oct 1, 2026

    • asset_audits

      Public
      Add audits to assets in sequencescape
      rubyrails
      rubyrails
      JavaScript
      •
      MIT License
      •7•3•4•11•Updated Oct 1, 2026Oct 1, 2026

    • record_loader

      Public
      Easily manage seeding and updating data from simple yml files
      Ruby
      •
      Other
      •1•0•0•7•Updated Oct 1, 2026Oct 1, 2026

    • gatekeeper

      Public
      Gatekeeper is used to track the production and validation of batches of tag plates for sequencing. It is designed to interface with the Sequencescape LIMS.
      rubyrails
      rubyrails
      Ruby
      •
      MIT License
      •5•0•5•11•Updated Oct 1, 2026Oct 1, 2026

    • unified_warehouse

      Public
      ruby
      ruby
      Ruby
      •
      MIT License
      •8•2•5•7•Updated Oct 1, 2026Oct 1, 2026

    • jsonapi-resources

      Public
      A resource-focused Rails library for developing JSON:API compliant servers.
      Ruby
      •
      MIT License
      •547•0•1•1•Updated Aug 20, 2026Aug 20, 2026

    • wrangler

      Public
      A microservice to deal with tube racks
      Python
      •
      MIT License
      •2•0•2•13•Updated Aug 20, 2026Aug 20, 2026

    • tol-lab-share

      Public
      Rabbitmq consumer for TOL data input
      Python
      •
      MIT License
      •0•0•2•14•Updated Aug 20, 2026Aug 20, 2026

    • ui-styling

      Public
      NPM module to share ui styles based on Sanger brand guidelines using tailwind classes
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • sample-tracking

      Public
      Sample Tracking Report
      Python
      •0•0•5•0•Updated Jul 22, 2026Jul 22, 2026

    • .github

      Public
      Default community health files for Sanger
      0•0•0•0•Updated Jul 6, 2026Jul 6, 2026

    • lab-share-lib

      Public
      Python library to interact with lab-share framework
      Python
      •
      MIT License
      •0•0•1•13•Updated Jun 30, 2026Jun 30, 2026

    • lighthouse-ui-v3

      Public
      V3 front end for lighthouse API
      JavaScript
      •
      MIT License
      •0•0•2•17•Updated Jun 30, 2026Jun 30, 2026

    • lighthouse

      Public
      API to search through data provided by Lighthouse Labs
      Python
      •
      MIT License
      •1•2•18•12•Updated Jun 30, 2026Jun 30, 2026

    • sanger_barcode_format

      Public
      A ruby gem for handling the multiple format of barcodes
      rubygem
      rubygem
      Ruby
      •
      MIT License
      •1•3•0•1•Updated Jun 25, 2026Jun 25, 2026

    • views_schema

      Public
      A set of tasks to build/maintain views
      Ruby
      •
      MIT License
      •1•0•0•1•Updated Jun 5, 2026Jun 5, 2026
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