Repositories list

• neuro-workflow

  Public
  Jupyter Notebook

  •

  Other

  •99 forks in oist/neuro-workflow•1919 stars in oist/neuro-workflow•1010 issues in oist/neuro-workflow•1414 pull requests in oist/neuro-workflow•Updated Oct 29, 2026Oct 29, 2026

• LuscombeU_Oikopleura_Selenoproteins

  Public
  Python

  •00 forks in oist/LuscombeU_Oikopleura_Selenoproteins•00 stars in oist/LuscombeU_Oikopleura_Selenoproteins•00 issues in oist/LuscombeU_Oikopleura_Selenoproteins•00 pull requests in oist/LuscombeU_Oikopleura_Selenoproteins•Updated Oct 29, 2026Oct 29, 2026

• VisualStimulation

  Public
  matlab gui for vstim with psychophysics toolbox

  Jupyter Notebook

  •00 forks in oist/VisualStimulation•44 stars in oist/VisualStimulation•00 issues in oist/VisualStimulation•00 pull requests in oist/VisualStimulation•Updated Oct 28, 2026Oct 28, 2026

• mlss2027okinawa

  Public
  Machine Learning Summer School 2027

  HTML

  •

  MIT License

  •00 forks in oist/mlss2027okinawa•11 star in oist/mlss2027okinawa•00 issues in oist/mlss2027okinawa•00 pull requests in oist/mlss2027okinawa•Updated Oct 27, 2026Oct 27, 2026

• optinist

  Public
  calcium imaging pipeline tool

  neurosciencecalcium-imaging

  neurosciencecalcium-imaging

  TypeScript

  •

  GNU General Public License v3.0

  •1717 forks in oist/optinist•5050 stars in oist/optinist•2525 issues in oist/optinist•77 pull requests in oist/optinist•Updated Oct 27, 2026Oct 27, 2026

• Chakraborty_GoCD_Configs

  Public
  Repository containing pipeline configuration files in YAML format for GoCD server configuration.

  Python

  •

  MIT License

  •00 forks in oist/Chakraborty_GoCD_Configs•00 stars in oist/Chakraborty_GoCD_Configs•00 issues in oist/Chakraborty_GoCD_Configs•00 pull requests in oist/Chakraborty_GoCD_Configs•Updated Oct 27, 2026Oct 27, 2026

• AntsArray

  Public
  Python

  •00 forks in oist/AntsArray•11 star in oist/AntsArray•00 issues in oist/AntsArray•00 pull requests in oist/AntsArray•Updated Oct 26, 2026Oct 26, 2026

• PPL_Builder

  Public
  Tool for building LabVIEW Packed Project Library files on Windows and cRIO-9045

  LabVIEW

  •

  MIT License

  •00 forks in oist/PPL_Builder•11 star in oist/PPL_Builder•00 issues in oist/PPL_Builder•00 pull requests in oist/PPL_Builder•Updated Oct 26, 2026Oct 26, 2026

• GenomicBreaks

  Public
  Pairwise Alignment Breakpoint Analysis

  rcomparative-genomics

  rcomparative-genomics

  R

  •

  Other

  •33 forks in oist/GenomicBreaks•66 stars in oist/GenomicBreaks•2121 issues in oist/GenomicBreaks•11 pull request in oist/GenomicBreaks•Updated Oct 24, 2026Oct 24, 2026

• ScrambledTreeBuilder

  Public
  Builds Phylogenetic Trees Showcasing Genome Scrambling

  R

  •

  Other

  •11 fork in oist/ScrambledTreeBuilder•11 star in oist/ScrambledTreeBuilder•22 issues in oist/ScrambledTreeBuilder•11 pull request in oist/ScrambledTreeBuilder•Updated Oct 23, 2026Oct 23, 2026

• BioinfoUgrp

  Public
  OIST Bioinfo user group

  bioinformaticshpcoist

  bioinformaticshpcoist

  Shell

  •22 forks in oist/BioinfoUgrp•1313 stars in oist/BioinfoUgrp•11 issue in oist/BioinfoUgrp•00 pull requests in oist/BioinfoUgrp•Updated Oct 23, 2026Oct 23, 2026

• iSciComp

  Public
  JupyterBook: Introduction to Scientific Computation

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •33 forks in oist/iSciComp•77 stars in oist/iSciComp•00 issues in oist/iSciComp•00 pull requests in oist/iSciComp•Updated Oct 21, 2026Oct 21, 2026

• LuscombeU_Selenoproteins_Pipeline

  Public
  Nextflow

  •

  MIT License

  •00 forks in oist/LuscombeU_Selenoproteins_Pipeline•00 stars in oist/LuscombeU_Selenoproteins_Pipeline•00 issues in oist/LuscombeU_Selenoproteins_Pipeline•00 pull requests in oist/LuscombeU_Selenoproteins_Pipeline•Updated Oct 17, 2026Oct 17, 2026

• SiamJEPA

  Public
  Python

  •

  Other

  •00 forks in oist/SiamJEPA•66 stars in oist/SiamJEPA•00 issues in oist/SiamJEPA•00 pull requests in oist/SiamJEPA•Updated Oct 15, 2026Oct 15, 2026

• subarashii-annotation-pipeline

  Public
  1007 genomes annotation pipeline

  Shell

  •00 forks in oist/subarashii-annotation-pipeline•00 stars in oist/subarashii-annotation-pipeline•00 issues in oist/subarashii-annotation-pipeline•00 pull requests in oist/subarashii-annotation-pipeline•Updated Oct 14, 2026Oct 14, 2026

• GridCorrection

  Public
  MATLAB

  •00 forks in oist/GridCorrection•00 stars in oist/GridCorrection•00 issues in oist/GridCorrection•00 pull requests in oist/GridCorrection•Updated Oct 14, 2026Oct 14, 2026

• emevo

  Public
  Simluate Embodied Evolution of Agents

  Python

  •

  Apache License 2.0

  •00 forks in oist/emevo•66 stars in oist/emevo•00 issues in oist/emevo•00 pull requests in oist/emevo•Updated Oct 13, 2026Oct 13, 2026

• gecs

  Public
  Good Enough Coding in Science teaches software development practices for scientific projects

  sciencewebsiteteaching+ 1

  sciencewebsiteteachingreproducibility

  HTML

  •

  MIT License

  •22 forks in oist/gecs•00 stars in oist/gecs•00 issues in oist/gecs•00 pull requests in oist/gecs•Updated Oct 2, 2026Oct 2, 2026

• LaTeX-template-lab-rotation-proposal

  Public
  LaTeX Template for the OIST Lab Rotation Proposal

  TeX

  •

  MIT License

  •44 forks in oist/LaTeX-template-lab-rotation-proposal•22 stars in oist/LaTeX-template-lab-rotation-proposal•00 issues in oist/LaTeX-template-lab-rotation-proposal•00 pull requests in oist/LaTeX-template-lab-rotation-proposal•Updated Oct 2, 2026Oct 2, 2026

• git-tic-tac-toe

  Public
  Git Tic-Tac-Toe test for SCDA Training Week Workshop

  00 forks in oist/git-tic-tac-toe•00 stars in oist/git-tic-tac-toe•00 issues in oist/git-tic-tac-toe•00 pull requests in oist/git-tic-tac-toe•Updated Oct 1, 2026Oct 1, 2026

• nf-core_configs

  Public
  Config files used to define parameters specific to compute environments at different Institutions

  Nextflow

  •

  MIT License

  •377377 forks in oist/nf-core_configs•00 stars in oist/nf-core_configs•00 issues in oist/nf-core_configs•00 pull requests in oist/nf-core_configs•Updated Sep 29, 2026Sep 29, 2026

• MLcourse

  Public
  JavaScript

  •00 forks in oist/MLcourse•00 stars in oist/MLcourse•00 issues in oist/MLcourse•00 pull requests in oist/MLcourse•Updated Sep 28, 2026Sep 28, 2026

• LuscombeU_nfcore_pairgenomealign_fork

  Public
  Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

  Nextflow

  •

  MIT License

  •66 forks in oist/LuscombeU_nfcore_pairgenomealign_fork•00 stars in oist/LuscombeU_nfcore_pairgenomealign_fork•00 issues in oist/LuscombeU_nfcore_pairgenomealign_fork•00 pull requests in oist/LuscombeU_nfcore_pairgenomealign_fork•Updated Sep 24, 2026Sep 24, 2026

• imrl

  Public
  Official implementation of my PhD thesis entitled "Unified Information-Theoretic Framework for Intrinsic Rewards in Reinforcement Learning".

  Python

  •

  MIT License

  •00 forks in oist/imrl•22 stars in oist/imrl•00 issues in oist/imrl•00 pull requests in oist/imrl•Updated Sep 18, 2026Sep 18, 2026

• bookstats

  Public
  Word frequency analysis "stolen" from RSE in Python by Wilson et al.

  Python

  •11 fork in oist/bookstats•00 stars in oist/bookstats•00 issues in oist/bookstats•00 pull requests in oist/bookstats•Updated Sep 16, 2026Sep 16, 2026

• plessy_multiCRAMutils

  Public
  Utilities for the multi-genome CRAM files generated by nf-core/pairgenomealign.

  Python

  •00 forks in oist/plessy_multiCRAMutils•00 stars in oist/plessy_multiCRAMutils•00 issues in oist/plessy_multiCRAMutils•00 pull requests in oist/plessy_multiCRAMutils•Updated Sep 11, 2026Sep 11, 2026

• BioinfoUgrp_UnixGoodies_Images

  Public
  Singularity images with cool Unix tools to be exported as modules in HPC clusters

  Dockerfile

  •00 forks in oist/BioinfoUgrp_UnixGoodies_Images•33 stars in oist/BioinfoUgrp_UnixGoodies_Images•11 issue in oist/BioinfoUgrp_UnixGoodies_Images•00 pull requests in oist/BioinfoUgrp_UnixGoodies_Images•Updated Sep 9, 2026Sep 9, 2026

• plessy_nf_GenomicBreaks

  Public
  Draft Nextflow pipeline to convert alignment files and extract basic stats.

  Nextflow

  •11 fork in oist/plessy_nf_GenomicBreaks•00 stars in oist/plessy_nf_GenomicBreaks•00 issues in oist/plessy_nf_GenomicBreaks•11 pull request in oist/plessy_nf_GenomicBreaks•Updated Sep 3, 2026Sep 3, 2026

• luscombeu_rrnascan

  Public
  Nextflow pipeline to scan and extract rRNA reads from sequencing data

  Nextflow

  •

  MIT License

  •11 fork in oist/luscombeu_rrnascan•00 stars in oist/luscombeu_rrnascan•00 issues in oist/luscombeu_rrnascan•00 pull requests in oist/luscombeu_rrnascan•Updated Aug 28, 2026Aug 28, 2026

• LuscombeU_odioica_augustus_nf

  Public
  Nextflow pipeline for o. dioica genome annotation using AUGUSTUS

  Nextflow

  •

  MIT License

  •00 forks in oist/LuscombeU_odioica_augustus_nf•00 stars in oist/LuscombeU_odioica_augustus_nf•00 issues in oist/LuscombeU_odioica_augustus_nf•00 pull requests in oist/LuscombeU_odioica_augustus_nf•Updated Aug 28, 2026Aug 28, 2026