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    14 repositories

    • camps

      Public
      Analysis software for the CAMP cell-motility study
      reproducible-researchmsdtrackmate
      reproducible-researchmsdtrackmatecell-motilitysingle-cell-tracking
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 25, 2026Aug 25, 2026

    • CELLISA

      Public
      A User-Friendly Program for Evaluating Cell-Cell Binding
      Python
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • HBS_GAMES

      Public
      supporting code for HBS model in the GAMES v2.0.0 framework
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 21, 2025Feb 21, 2025

    • GAMES

      Public
      GAMES (Generation and Analysis of Mathematical Models for Exploring Synthetic systems): A dynamic model development workflow for rigorous characterization of sy…
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jul 15, 2024Jul 15, 2024

    • COVID_Dx_GAMES2

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • COVID_Dx_GAMES

      Public
      Python
      •0•1•0•0•Updated Jun 24, 2024Jun 24, 2024

    • GAMES_education

      Public
      Supporting code for the homework set defined in the GAMES education paper ("Teaching rigorous, reproducible model development using synthetic biology" in Chemic…
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 18, 2024Apr 18, 2024

    • pyflowbat-docs

      Public
      Documentation for the PyFlowBAT Package.
      documentationbioinformaticssphinx
      documentationbioinformaticssphinxcomputational-biology
      HTML
      •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • PlantDX_GAMES

      Public archive
      supporting code for the Plant-DX model
      Jupyter Notebook
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • GEMINI-HTS

      Public
      Python
      •0•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • MESAFRET

      Public
      Accompanying supplementary software for the following publication: Elucidation and refinement of synthetic receptor mechanisms
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Sep 13, 2020Sep 13, 2020

    • GeneticPrograms

      Public
      Model-guided design of mammalian genetic programs
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Sep 3, 2020Sep 3, 2020

    • MacrophageQL

      Public
      Macrophages employ quorum licensing to regulate collective activation
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2019Nov 12, 2019

    • COMET

      Public template
      The COMET toolkit for composing customizable genetic programs in mammalian cells
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2019Nov 12, 2019
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