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@idekerlab UC, San Diego Trey Ideker Lab

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    185 repositories

    • cellmaps_utils

      Public
      Python
      •
      MIT License
      •1•1•4•0•Updated Oct 5, 2026Oct 5, 2026

    • cellmaps_generate_hierarchy

      Public
      Python
      •
      MIT License
      •4•0•1•1•Updated Sep 30, 2026Sep 30, 2026

    • cansrmapp

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • cellmaps_ppidownloader

      Public
      Python
      •
      MIT License
      •1•0•4•0•Updated Jul 27, 2026Jul 27, 2026

    • cellmaps_pipeline

      Public
      Python
      •
      MIT License
      •2•17•0•0•Updated Jul 27, 2026Jul 27, 2026

    • cellmaps_vnn

      Public
      Python
      •
      MIT License
      •2•0•1•0•Updated Jul 27, 2026Jul 27, 2026

    • cellmaps_image_embedding

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • cellmaps_hierarchyeval

      Public
      Code for hierarchy evaluation
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • cellmaps_coembedding

      Public
      Python
      •
      MIT License
      •2•1•1•1•Updated Jul 10, 2026Jul 10, 2026

    • enrichment_service

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • MutationProjector

      Public
      Source code for MutationProjector
      Python
      •
      MIT License
      •2•7•0•0•Updated Jul 4, 2026Jul 4, 2026

    • codonprime-toolkit

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jun 10, 2026Jun 10, 2026

    • hit_map

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • cellmaps_ppi_embedding

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 2, 2026Jun 2, 2026

    • network-viewer

      Public
      TypeScript
      •1•2•2•8•Updated Jun 2, 2026Jun 2, 2026

    • example_service_apps

      Public
      Python
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • memento_legacy

      Public
      memento
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2026May 21, 2026

    • G2PT

      Public
      Jupyter Notebook
      •
      MIT License
      •3•22•2•0•Updated Apr 23, 2026Apr 23, 2026

    • chromosomeloc_annotator

      Public
      Python
      •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • KEGGscape

      Public
      A Cytoscape app for importing KGML(KEGG pathway XML)
      Java
      •
      Apache License 2.0
      •11•27•19•0•Updated Mar 13, 2026Mar 13, 2026

    • cdhidef

      Public
      Python
      •
      Other
      •0•1•0•2•Updated Feb 26, 2026Feb 26, 2026

    • cellmaps_imagedownloader

      Public
      Python
      •
      MIT License
      •1•0•5•0•Updated Feb 20, 2026Feb 20, 2026

    • open-cyweb

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•2•0•Updated Feb 19, 2026Feb 19, 2026

    • csn_vnni

      Public
      Interpretable neural network for predicting drug responses and deciphering the effect of specific genetic alterations on sensitivity and resistance
      Python
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • agent_evaluation

      Public
      Supports papers on the development and evaluation of analyst and reviewer agents. Generate and evaluate mechanistic hypotheses derived from datasets.
      Jupyter Notebook
      •
      MIT License
      •1•2•8•3•Updated Sep 18, 2025Sep 18, 2025

    • cellmaps_annotate_hierarchy

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 7, 2025Jul 7, 2025

    • test_cyweb_service_app

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Jul 3, 2025Jul 3, 2025

    • nest_vnn

      Public
      NeST-VNN repo
      Python
      •
      MIT License
      •7•12•1•0•Updated Jun 13, 2025Jun 13, 2025

    • networkx_cyweb_analyzer

      Public
      Python
      •
      Other
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • cookiecutter-musicpypackage

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Apr 1, 2025Apr 1, 2025
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