Repositories list

• MethylSeq

  Public
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

  Nextflow

  •

  MIT License

  •00 forks in VIBTOBIlab/MethylSeq•11 star in VIBTOBIlab/MethylSeq•00 issues in VIBTOBIlab/MethylSeq•00 pull requests in VIBTOBIlab/MethylSeq•Updated Oct 23, 2026Oct 23, 2026

• DecoNFlow

  Public
  DecoNFlow is a bioinformatics analysis pipeline used for computational deconvolution of DNA methylation data. It allows deconvolution of samples using both refe…

  Nextflow

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  MIT License

  •22 forks in VIBTOBIlab/DecoNFlow•33 stars in VIBTOBIlab/DecoNFlow•00 issues in VIBTOBIlab/DecoNFlow•00 pull requests in VIBTOBIlab/DecoNFlow•Updated Oct 23, 2026Oct 23, 2026

• Shiny-DNAmBenchmarking

  Public
  Shiny Application for DNAmBenchmarking paper doi: 10.1101/2025.11.27.688590

  dockerbenchmarkingsingularity+ 3

  dockerbenchmarkingsingularityrshinyappdeconvolution-methodsdnamethylation

  R

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  MIT License

  •11 fork in VIBTOBIlab/Shiny-DNAmBenchmarking•00 stars in VIBTOBIlab/Shiny-DNAmBenchmarking•00 issues in VIBTOBIlab/Shiny-DNAmBenchmarking•00 pull requests in VIBTOBIlab/Shiny-DNAmBenchmarking•Updated Oct 22, 2026Oct 22, 2026

• deconflow_testdata

  Public
  Repository containing toy data to test DecoNFlow pipeline

  00 forks in VIBTOBIlab/deconflow_testdata•00 stars in VIBTOBIlab/deconflow_testdata•00 issues in VIBTOBIlab/deconflow_testdata•00 pull requests in VIBTOBIlab/deconflow_testdata•Updated Oct 19, 2026Oct 19, 2026

• BenchmarkingAnalysis

  Public
  Repository containing scripts and tutorials to reproduce the benchmarking results.

  R

  •

  MIT License

  •00 forks in VIBTOBIlab/BenchmarkingAnalysis•00 stars in VIBTOBIlab/BenchmarkingAnalysis•00 issues in VIBTOBIlab/BenchmarkingAnalysis•00 pull requests in VIBTOBIlab/BenchmarkingAnalysis•Updated Oct 2, 2026Oct 2, 2026

• scRNAseq_InVitro_ImmuneStimulation

  Public
  This repository encloses necessary code supporting the manuscript entitled "Stimulation strategy matters: A B-cell focused single-cell transcriptomic study on i…

  R

  •00 forks in VIBTOBIlab/scRNAseq_InVitro_ImmuneStimulation•00 stars in VIBTOBIlab/scRNAseq_InVitro_ImmuneStimulation•00 issues in VIBTOBIlab/scRNAseq_InVitro_ImmuneStimulation•00 pull requests in VIBTOBIlab/scRNAseq_InVitro_ImmuneStimulation•Updated Aug 28, 2026Aug 28, 2026

• methurator

  Public
  Methurator is a Python package designed to estimate CpGs saturation for DNA methylation sequencing data.

  methylationwgbsrrbs+ 1

  methylationwgbsrrbssequencing-saturation

  Python

  •

  MIT License

  •11 fork in VIBTOBIlab/methurator•11 star in VIBTOBIlab/methurator•00 issues in VIBTOBIlab/methurator•00 pull requests in VIBTOBIlab/methurator•Updated Jul 20, 2026Jul 20, 2026

• Sillymix

  Public
  Sillymix is a bioinformatics analysis pipeline used to perform in-silico mixtures of tumoral and healthy fastq files at specified sequencing depth (in number of…

  Nextflow

  •

  MIT License

  •00 forks in VIBTOBIlab/Sillymix•00 stars in VIBTOBIlab/Sillymix•00 issues in VIBTOBIlab/Sillymix•00 pull requests in VIBTOBIlab/Sillymix•Updated Mar 10, 2026Mar 10, 2026

• methurator_paper

  Public
  Repository to reproduce methurator paper analyses

  Jupyter Notebook

  •00 forks in VIBTOBIlab/methurator_paper•00 stars in VIBTOBIlab/methurator_paper•00 issues in VIBTOBIlab/methurator_paper•00 pull requests in VIBTOBIlab/methurator_paper•Updated Feb 1, 2026Feb 1, 2026

• VIBTOBIlab.github.io

  Public
  SCSS

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  Other

  •11 fork in VIBTOBIlab/VIBTOBIlab.github.io•00 stars in VIBTOBIlab/VIBTOBIlab.github.io•00 issues in VIBTOBIlab/VIBTOBIlab.github.io•00 pull requests in VIBTOBIlab/VIBTOBIlab.github.io•Updated Jan 9, 2026Jan 9, 2026

• BismarkPipeline

  Public
  Methylation (Bisulfite-Sequencing) analysis pipeline of cfRRBS samples using Bismark

  HTML

  •11 fork in VIBTOBIlab/BismarkPipeline•00 stars in VIBTOBIlab/BismarkPipeline•00 issues in VIBTOBIlab/BismarkPipeline•00 pull requests in VIBTOBIlab/BismarkPipeline•Updated Jul 4, 2025Jul 4, 2025

• NBAtlas_manuscript

  Public
  Jupyter Notebook

  •00 forks in VIBTOBIlab/NBAtlas_manuscript•11 star in VIBTOBIlab/NBAtlas_manuscript•00 issues in VIBTOBIlab/NBAtlas_manuscript•00 pull requests in VIBTOBIlab/NBAtlas_manuscript•Updated Sep 10, 2024Sep 10, 2024

• cfRRBSonCUPs

  Public template
  HTML

  •00 forks in VIBTOBIlab/cfRRBSonCUPs•00 stars in VIBTOBIlab/cfRRBSonCUPs•00 issues in VIBTOBIlab/cfRRBSonCUPs•00 pull requests in VIBTOBIlab/cfRRBSonCUPs•Updated Jul 25, 2024Jul 25, 2024

• DMRpipeline

  Public
  Python

  •00 forks in VIBTOBIlab/DMRpipeline•00 stars in VIBTOBIlab/DMRpipeline•00 issues in VIBTOBIlab/DMRpipeline•00 pull requests in VIBTOBIlab/DMRpipeline•Updated Feb 11, 2024Feb 11, 2024