Repositories list

• mimosa

  Public
  MIMOSA: Integrated Assessment Model for global cost-benefit analysis of climate policy

  Python

  •

  GNU General Public License v3.0

  •77 forks•77 stars•00 issues•11 pull request•Updated Oct 6, 2026Oct 6, 2026

• MEGAISurv-Namaste

  Public

  UtrechtUniversity/MEGAISurv-Namaste’s past year of commit activity
  Nanopore Metagenomic Antibiotic Resistance and Taxonomy Screening

  snakemakemetagenomicsantibiotic-resistance+ 2

  snakemakemetagenomicsantibiotic-resistancetaxonomic-classificationnanopore-sequencing

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•44 stars•77 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• epos-msl

  Public

  UtrechtUniversity/epos-msl’s past year of commit activity
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4

  redisansiblesolrpostgresqlckanapache2epos

  Shell

  •

  GNU General Public License v3.0

  •11 fork•77 stars•00 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• FSW-OTree-container

  Public

  UtrechtUniversity/FSW-OTree-container’s past year of commit activity
  OTree example running in a Docker container

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• src-ray-provider

  Public

  UtrechtUniversity/src-ray-provider’s past year of commit activity
  Ray autoscaler node provider for SURF ResearchCloud (SRC).

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• src-component-ray

  Public

  UtrechtUniversity/src-component-ray’s past year of commit activity
  A SURF ResearchCloud component for ray.io

  Jinja

  •00 forks•00 stars•55 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• yoda-ruleset

  Public

  UtrechtUniversity/yoda-ruleset’s past year of commit activity
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •1212 forks•1010 stars•00 issues•33 pull requests•Updated Oct 6, 2026Oct 6, 2026

• yoda-portal

  Public

  UtrechtUniversity/yoda-portal’s past year of commit activity
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1

  pythonflaskyodairods

  JavaScript

  •

  GNU General Public License v3.0

  •1313 forks•1010 stars•00 issues•33 pull requests•Updated Oct 6, 2026Oct 6, 2026

• ricgraph

  Public

  UtrechtUniversity/ricgraph’s past year of commit activity
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 15

  visualizationmetadataenrichmentgraphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 8

  Python

  •

  MIT License

  •77 forks•3333 stars•00 issues•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• numworx-gwt-widgets

  Public

  UtrechtUniversity/numworx-gwt-widgets’s past year of commit activity
  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•44 pull requests•Updated Oct 6, 2026Oct 6, 2026

• uu-quarto-presentation-template

  Public template

  UtrechtUniversity/uu-quarto-presentation-template’s past year of commit activity
  Template repository for creating a UU styled Quarto presentation

  quartoutrecht-universityquarto-template

  quartoutrecht-universityquarto-template

  SCSS

  •

  Apache License 2.0

  •33 forks•1313 stars•11 issue•00 pull requests•Updated Oct 6, 2026Oct 6, 2026

• yoda

  Public

  UtrechtUniversity/yoda’s past year of commit activity
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4

  ansibledataresearchyodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •2727 forks•6161 stars•3939 issues•44 pull requests•Updated Oct 6, 2026Oct 6, 2026

• msl_api

  Public

  UtrechtUniversity/msl_api’s past year of commit activity
  PHP

  •11 fork•00 stars•00 issues•1010 pull requests•Updated Oct 6, 2026Oct 6, 2026

• numworx-dwo-project

  Public

  UtrechtUniversity/numworx-dwo-project’s past year of commit activity
  Het DWO project

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•44 pull requests•Updated Oct 6, 2026Oct 6, 2026

• vre-docs

  Public

  UtrechtUniversity/vre-docs’s past year of commit activity
  User documentation for Research Cloud tailored at UU researchers

  Lua

  •

  MIT License

  •33 forks•33 stars•1010 issues•11 pull request•Updated Oct 6, 2026Oct 6, 2026

• animal-sounds

  Public

  UtrechtUniversity/animal-sounds’s past year of commit activity
  Python modules for detecting Chimpanze sounds in bioacoustic datasets using machine learning and deep learning.

  machine-learningdeep-learningspeech+ 2

  machine-learningdeep-learningspeechaudio-processingutrecht-university

  Python

  •

  Apache License 2.0

  •44 forks•1414 stars•11 issue•11 pull request•Updated Oct 6, 2026Oct 6, 2026

• containerplatform-docs

  Public

  UtrechtUniversity/containerplatform-docs’s past year of commit activity
  Container Platform public documentation

  Dockerfile

  •11 fork•33 stars•00 issues•55 pull requests•Updated Oct 5, 2026Oct 5, 2026

• yoda-external-user-service

  Public
  A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyoda

  pythonyoda

  Python

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•11 pull request•Updated Oct 5, 2026Oct 5, 2026

• ntx

  Public
  Processing and visualization of MicroElectrode Array data for neurotoxicology

  Python

  •

  MIT License

  •00 forks•00 stars•1313 issues•22 pull requests•Updated Oct 5, 2026Oct 5, 2026

• SRC-molecule

  Public
  A set of molecule configuration files to faciliate testing of SURF Research Cloud items.

  00 forks•00 stars•33 issues•00 pull requests•Updated Oct 5, 2026Oct 5, 2026

• ibridges-ansible

  Public
  Ansible modules for syncing data with iRODS using iBridges.

  Python

  •

  MIT License

  •00 forks•11 star•44 issues•11 pull request•Updated Oct 5, 2026Oct 5, 2026

• mea-rasterplotter

  Public
  Extract spike timings from Axion MEA .spk files and visualize them with rasterplots

  multi-electrode-arrayraster-plotmarimo+ 1

  multi-electrode-arrayraster-plotmarimoneurotoxicology

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 2, 2026Oct 2, 2026

• researchcloud-items

  Public
  Installation scripts for SURF ResearchCloud catalog components

  ansible-roleresearch-cloud

  ansible-roleresearch-cloud

  Jinja

  •

  GNU General Public License v3.0

  •44 forks•99 stars•4141 issues•77 pull requests•Updated Oct 1, 2026Oct 1, 2026

• src-api-sdk

  Public
  A simple API CLI client for SURF ResearchCloud.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2026Oct 1, 2026

• claude-code-template

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 1, 2026Oct 1, 2026

• ecobuild

  Public
  A website for the EcoBuild project, built using Astro.

  Astro

  •00 forks•11 star•33 issues•1212 pull requests•Updated Sep 30, 2026Sep 30, 2026

• ecobuild-graph-pipeline

  Public archive
  The source code repository for the EcoBUILD knowledge graph pipeline.

  Python

  •00 forks•11 star•1313 issues•99 pull requests•Updated Sep 30, 2026Sep 30, 2026

• press_pure

  Public
  import media items from lexis nexis newsdesk to pure

  Python

  •

  MIT License

  •00 forks•00 stars•44 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• SPMSP-instances

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2026Sep 30, 2026

• workshop-r-booster

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 29, 2026Sep 29, 2026