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@TissueImageAnalytics Tissue Image Analytics (TIA) Centre

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    15 repositories

    • tiatoolbox

      Public
      Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
      pythonmachine-learningdeep-learning
      pythonmachine-learningdeep-learningimage-analysiscell-segmentationdigital-pathologywhole-slide-imagingmedical-image-analysiscomputational-pathologycell-classification
      Python
      •
      Other
      •118•561•4•13•Updated Oct 27, 2026Oct 27, 2026

    • cytomine-app

      Public
      Implementation of TIAToolbox models in Cytomine
      Python
      •
      Apache License 2.0
      •2•3•0•0•Updated Jul 8, 2026Jul 8, 2026

    • wasabi-annotations-management

      Public
      WASABI Annotations Management Tool
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • CORE

      Public
      CORE is a coarse-to-fine framework for nuclei-level registration of multimodal whole-slide images. It integrates tissue mask extraction, global alignment, and f…
      Python
      •2•1•0•0•Updated Apr 12, 2026Apr 12, 2026

    • CHIMERA-Challenge

      Public
      This is TIA-Pegasus repository for CHIMERA-Challenge.
      Python
      •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • wsic

      Public
      Whole Slide image (WSI) conversion for brightfield histology images
      Python
      •
      MIT License
      •11•1•0•0•Updated Mar 31, 2025Mar 31, 2025

    • cerberus

      Public
      One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
      pythondeep-learningpytorch
      pythondeep-learningpytorchmulti-task-learningcomputational-pathology
      Python
      •
      GNU General Public License v3.0
      •16•104•6•0•Updated Nov 27, 2024Nov 27, 2024

    • iguana

      Public
      Interpretable Gland-Graph Networks
      pythondeep-learningpytorch
      pythondeep-learningpytorchcomputational-pathologypytorch-geometricgraph-neural-network
      Python
      •
      GNU General Public License v3.0
      •4•22•1•1•Updated Mar 7, 2024Mar 7, 2024

    • BRACE-marker

      Public
      Tumour Grade Composition Index
      Python
      •1•1•0•0•Updated Sep 14, 2023Sep 14, 2023

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6.5k•1•0•0•Updated Jan 20, 2022Jan 20, 2022

    • PanNuke-metrics

      Public archive
      Evaluation code for the PanNuke dataset
      Python
      •6•31•0•0•Updated Oct 20, 2020Oct 20, 2020

    • TIAMultiProc

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 28, 2020Sep 28, 2020

    • hover_net

      Public
      Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
      Python
      •
      MIT License
      •275•3•0•0•Updated Mar 15, 2020Mar 15, 2020

    • ExtractPatchesFromAnnotatedRegions

      Public
      This pipeline will extract the annotated regions of WSI annotated by ASAP software based on the inputs such as patch size and resolution
      Python
      •1•3•1•0•Updated Dec 18, 2019Dec 18, 2019

    • TILAb-Score

      Public
      This repository contains the implementation of TILAb-score as described in the original paper.
      Python
      •
      Other
      •4•20•0•0•Updated Oct 3, 2019Oct 3, 2019
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