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    Repositories list

    39 repositories

    • chesler-lab

      Public
      Code repositories for projects and initiatives associated with the Chesler Lab. See https://www.jax.org/research-and-faculty/research-labs/the-chesler-lab
      R
      •
      Other
      •0•0•0•0•Updated Sep 3, 2026Sep 3, 2026

    • mTOR

      Public
      This is a repository for code used in the manuscript titled "mTOR Signaling is a Key Modifier and Therapeutic Target in a Mouse Model of X-linked Alport Syndrom…
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • outcrossSimulator

      Public
      Simulator for outcross mice
      R
      •
      Other
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • NBL1

      Public
      This is a repository for code used in the manuscript titled "NBL1 Associates with Renal Phenotypes in Mice, but Partial Nbl1 Reduction Does Not Ameliorate Kidne…
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • quilt-nf

      Public
      R
      •0•1•0•0•Updated Sep 3, 2025Sep 3, 2025

    • haplotype_reconstruction_qtl-nf

      Public
      R
      •0•0•1•0•Updated Jun 4, 2025Jun 4, 2025

    • ClimbR

      Public archive
      R
      •0•0•0•0•Updated May 20, 2025May 20, 2025

    • cape

      Public
      An R package for the combined analysis of Epistasis and Pleiotropy
      R
      •2•8•1•0•Updated Apr 17, 2025Apr 17, 2025

    • bioconnect-jbqr

      Public
      R wrapper for JBQ (JAX BioConnect Query tool)
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • isopretEM

      Public
      R
      •
      GNU General Public License v3.0
      •1•2•0•2•Updated Jun 10, 2024Jun 10, 2024

    • lcGBS_wf

      Public
      R
      •1•1•0•1•Updated Mar 24, 2024Mar 24, 2024

    • GenomeMUSter

      Public
      GenomeMUSter is available at https://muster.jax.org/
      R
      •
      MIT License
      •0•1•0•0•Updated Jan 10, 2024Jan 10, 2024

    • meta-analysis

      Public
      R
      •0•0•0•0•Updated Aug 10, 2023Aug 10, 2023

    • gene_exp_psi

      Public
      Gene expression and percent spliced in
      R
      •
      MIT License
      •0•2•1•0•Updated Jul 20, 2023Jul 20, 2023

    • HBA-DEALS

      Public
      HBA-DEALS
      R
      •
      GNU General Public License v3.0
      •4•10•1•0•Updated Jun 15, 2023Jun 15, 2023

    • Serreze-T1D_Workflow

      Public
      R
      •1•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • r_hne_image_utils

      Public
      R utilities for H&E image post-processing
      R
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • mtdna-evolution

      Public
      Longitudinal analysis of mitochondrial genome evolution
      R
      •0•0•0•0•Updated May 30, 2022May 30, 2022

    • BRCA-LRseq-pipeline

      Public
      Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
      R
      •
      MIT License
      •4•15•0•0•Updated May 17, 2022May 17, 2022

    • covid19splicing

      Public
      Betacoronavirus splicing analysis
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Nov 9, 2021Nov 9, 2021

    • mousegwas

      Public
      An R package for easy execution of mouse GWAS
      R
      •2•2•0•0•Updated Sep 23, 2021Sep 23, 2021

    • C57_qtl

      Public
      R
      •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • slurmSubmit

      Public
      R package to submit remote R script jobs to Slurm clusters
      R
      •
      Other
      •1•0•0•0•Updated May 15, 2021May 15, 2021

    • epihet

      Public
      EpiHet
      R
      •3•4•4•0•Updated Dec 29, 2020Dec 29, 2020

    • cecum_otus

      Public
      Statistical analysis of cecum microbiota of DO mice
      R
      •0•0•0•0•Updated Dec 2, 2020Dec 2, 2020

    • ChIA-view

      Public
      20191127
      R
      •2•4•0•0•Updated Aug 4, 2020Aug 4, 2020

    • RenalMRI

      Public
      MRI information to aid in the processing of Renal MRI images
      R
      •0•0•0•0•Updated Jun 17, 2020Jun 17, 2020

    • yarn

      Public
      YARN: Yet Another RNa-seq package
      R
      •3•1•0•0•Updated Feb 11, 2020Feb 11, 2020

    • BoxPlots_Wilcox_ANOVA

      Public
      Boxplots with statistics for gene expression data from TCGA and METABRIC
      R
      •0•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • Ucar_Aging_Shiny

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2019Dec 18, 2019
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