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@ProteinQure ProteinQure

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    32 repositories

    • monomer-database-datasets

      Public
      Repo creating different formats of the monomer database formats for Zenodo archiving
      proteinprotein-sequencesamino-acids
      proteinprotein-sequencesamino-acidspeptidesprotein-designpeptidepeptide-modificationmonomerpeptide-designpeptide-therapeutics
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•12•0•0•Updated Sep 30, 2026Sep 30, 2026

    • monomer-database-source

      Public
      Authoritative source data and release tooling for the peptide monomer database
      linkerproteinamino-acids
      linkerproteinamino-acidspeptidesprotein-designamino-acid-sequencepeptide-modificationpeptide-designpeptide-therapeuticsmonomers
      Python
      •
      Other
      •0•4•0•0•Updated Sep 30, 2026Sep 30, 2026

    • atomweaver

      Public
      A novel atom-cloud-first inverse folding model for NCAA peptide design.
      Python
      •
      GNU Affero General Public License v3.0
      •2•4•0•0•Updated Sep 30, 2026Sep 30, 2026

    • peptidearena

      Public
      De novo peptide design inverse folding benchmark dataset.
      MIT License
      •0•1•0•0•Updated Sep 23, 2026Sep 23, 2026

    • image-builder

      Public
      Tools for building Kubernetes disk images
      Shell
      •
      Apache License 2.0
      •508•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • protein_generator

      Public
      Joint sequence and structure generation with RoseTTAFold sequence space diffusion
      Python
      •
      MIT License
      •59•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • molecular-converter

      Public
      A CLI tool to seamlessly convert between various molecular file formats such as PDB, MOL2, mmCIF and many more.
      Python
      •0•0•0•0•Updated Jan 3, 2024Jan 3, 2024

    • pipdeptree

      Public
      A command line utility to display dependency tree of the installed Python packages
      Python
      •
      MIT License
      •161•0•0•0•Updated Oct 25, 2023Oct 25, 2023

    • fairseq

      Public
      Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
      Python
      •
      MIT License
      •6.7k•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • localcolabfold

      Public
      ColabFold on your local PC
      Python
      •
      MIT License
      •183•1•0•0•Updated Jun 13, 2023Jun 13, 2023

    • mordred

      Public
      a molecular descriptor calculator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •113•1•0•0•Updated Jan 18, 2023Jan 18, 2023

    • scargo

      Public
      Transpile Python scientific workflows to Argo
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 18, 2023Jan 18, 2023

    • invoke

      Public
      Pythonic task management & command execution.
      Python
      •
      BSD 2-Clause "Simplified" License
      •414•0•0•0•Updated Dec 31, 2022Dec 31, 2022

    • AbNumber

      Public
      Convenience Python APIs for antibody numbering using ANARCI
      Python
      •
      MIT License
      •14•0•0•0•Updated Sep 28, 2022Sep 28, 2022

    • ProteinMPNN

      Public
      Code for the ProteinMPNN paper
      Jupyter Notebook
      •
      MIT License
      •509•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • kuberay

      Public
      A toolkit to run Ray applications on Kubernetes
      Go
      •
      Apache License 2.0
      •881•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • vscode-moe-svl

      Public
      MOE SVL support for Visual Studio Code
      MIT License
      •1•3•0•0•Updated Aug 23, 2022Aug 23, 2022

    • mlflow-docker

      Public
      Docker image for MLflow.
      Dockerfile
      •
      Apache License 2.0
      •6•1•0•0•Updated Aug 18, 2022Aug 18, 2022

    • ray

      Public
      An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learn…
      Python
      •
      Apache License 2.0
      •8.1k•0•0•0•Updated Mar 13, 2022Mar 13, 2022

    • spektral

      Public
      Graph Neural Networks with Keras and Tensorflow 2.
      Python
      •
      MIT License
      •344•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • biopython

      Public
      Official git repository for Biopython (originally converted from CVS)
      Python
      •
      Other
      •2k•2•0•0•Updated Feb 16, 2022Feb 16, 2022

    • ANARCI

      Public
      Antibody Numbering and Antigen Receptor ClassIfication
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •129•0•0•0•Updated Sep 24, 2021Sep 24, 2021

    • BioPhi

      Public
      BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interf…
      Python
      •
      MIT License
      •65•0•0•0•Updated Sep 16, 2021Sep 16, 2021

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •3k•0•0•1•Updated Sep 9, 2021Sep 9, 2021

    • pqrs

      Public
      Python
      •0•0•0•0•Updated Aug 23, 2021Aug 23, 2021

    • cbh21-protein-solubility-challenge

      Public
      Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.
      hackathonprotein-structureprotein
      hackathonprotein-structureproteindrug-discoverysolubility-prediction
      Python
      •
      MIT License
      •23•24•0•1•Updated Apr 25, 2021Apr 25, 2021

    • rdkit-wheels

      Public
      Dockerfile
      •1•1•0•0•Updated Mar 28, 2021Mar 28, 2021

    • pyquil

      Public
      A Python library for quantum programming using Quil.
      Python
      •
      Apache License 2.0
      •361•1•0•0•Updated Oct 23, 2019Oct 23, 2019

    • visualize_HW

      Public
      Python script to visualize helical wheels based on input sequence.
      visualizationprotein-designpeptide
      visualizationprotein-designpeptidehelical-wheelsalpha-helices
      Python
      •
      MIT License
      •4•11•0•0•Updated Mar 27, 2019Mar 27, 2019

    • mdtraj

      Public
      A modern, open library for the analysis of molecular dynamics trajectories
      C
      •
      GNU Lesser General Public License v2.1
      •298•2•0•0•Updated Oct 9, 2018Oct 9, 2018
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