Repositories list

• EARLY-questionnaire

  Public
  R

  •00 forks in MendenLab/EARLY-questionnaire•00 stars in MendenLab/EARLY-questionnaire•00 issues in MendenLab/EARLY-questionnaire•00 pull requests in MendenLab/EARLY-questionnaire•Updated Oct 22, 2026Oct 22, 2026

• SAFARI

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in MendenLab/SAFARI•00 stars in MendenLab/SAFARI•00 issues in MendenLab/SAFARI•00 pull requests in MendenLab/SAFARI•Updated Sep 29, 2026Sep 29, 2026

• TwinWeaver

  Public
  A library for converting EHR data into LLM ingestible text.

  Python

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  Apache License 2.0

  •66 forks in MendenLab/TwinWeaver•2323 stars in MendenLab/TwinWeaver•00 issues in MendenLab/TwinWeaver•00 pull requests in MendenLab/TwinWeaver•Updated Aug 18, 2026Aug 18, 2026

• miRNAInt_Ferroptosis

  Public
  Multi-omics differential expression and integration using PPI networks

  omics-data-integrationdifferential-expression-analysismultiomics+ 1

  omics-data-integrationdifferential-expression-analysismultiomicsprotein-protein-interaction-network

  R

  •00 forks in MendenLab/miRNAInt_Ferroptosis•11 star in MendenLab/miRNAInt_Ferroptosis•00 issues in MendenLab/miRNAInt_Ferroptosis•00 pull requests in MendenLab/miRNAInt_Ferroptosis•Updated Jun 29, 2026Jun 29, 2026

• HelicoPredict-new-main

  Public
  Python

  •

  MIT License

  •00 forks in MendenLab/HelicoPredict-new-main•00 stars in MendenLab/HelicoPredict-new-main•00 issues in MendenLab/HelicoPredict-new-main•00 pull requests in MendenLab/HelicoPredict-new-main•Updated Jun 6, 2026Jun 6, 2026

• ncisd_endotypes

  Public
  This is the repository to the paper "Non-communicable inflammatory skin diseases comprise clinically meaningful distinct endotypes as identified by non-hypothes…

  Python

  •

  MIT License

  •00 forks in MendenLab/ncisd_endotypes•00 stars in MendenLab/ncisd_endotypes•00 issues in MendenLab/ncisd_endotypes•00 pull requests in MendenLab/ncisd_endotypes•Updated May 24, 2026May 24, 2026

• DEG_enrichment_tutorial

  Public
  00 forks in MendenLab/DEG_enrichment_tutorial•00 stars in MendenLab/DEG_enrichment_tutorial•00 issues in MendenLab/DEG_enrichment_tutorial•00 pull requests in MendenLab/DEG_enrichment_tutorial•Updated May 6, 2026May 6, 2026

• mendenlab.github.io

  Public
  Landing page for Menden Lab projects

  CSS

  •00 forks in MendenLab/mendenlab.github.io•00 stars in MendenLab/mendenlab.github.io•00 issues in MendenLab/mendenlab.github.io•00 pull requests in MendenLab/mendenlab.github.io•Updated May 6, 2026May 6, 2026

• Carotid_artery_plaque

  Public
  scrNA-seq & spatial transcriptomics of carotid artery plaques

  Jupyter Notebook

  •00 forks in MendenLab/Carotid_artery_plaque•22 stars in MendenLab/Carotid_artery_plaque•00 issues in MendenLab/Carotid_artery_plaque•00 pull requests in MendenLab/Carotid_artery_plaque•Updated Apr 23, 2026Apr 23, 2026

• MAXOMOD_CSF_Proteomics

  Public
  R

  •

  MIT License

  •00 forks in MendenLab/MAXOMOD_CSF_Proteomics•00 stars in MendenLab/MAXOMOD_CSF_Proteomics•00 issues in MendenLab/MAXOMOD_CSF_Proteomics•00 pull requests in MendenLab/MAXOMOD_CSF_Proteomics•Updated Feb 15, 2026Feb 15, 2026

• GDT

  Public
  Python

  •11 fork in MendenLab/GDT•33 stars in MendenLab/GDT•00 issues in MendenLab/GDT•00 pull requests in MendenLab/GDT•Updated Feb 2, 2026Feb 2, 2026

• DT-GPT

  Public
  Python

  •

  Apache License 2.0

  •1515 forks in MendenLab/DT-GPT•3030 stars in MendenLab/DT-GPT•00 issues in MendenLab/DT-GPT•00 pull requests in MendenLab/DT-GPT•Updated Dec 15, 2025Dec 15, 2025

• Pan-can_GEX_biomarkers

  Public
  R

  •00 forks in MendenLab/Pan-can_GEX_biomarkers•00 stars in MendenLab/Pan-can_GEX_biomarkers•00 issues in MendenLab/Pan-can_GEX_biomarkers•00 pull requests in MendenLab/Pan-can_GEX_biomarkers•Updated Oct 28, 2025Oct 28, 2025

• TRAF6_HOIP_huTcells_RNAseq

  Public
  11 fork in MendenLab/TRAF6_HOIP_huTcells_RNAseq•00 stars in MendenLab/TRAF6_HOIP_huTcells_RNAseq•00 issues in MendenLab/TRAF6_HOIP_huTcells_RNAseq•00 pull requests in MendenLab/TRAF6_HOIP_huTcells_RNAseq•Updated Oct 12, 2025Oct 12, 2025

• ST_SebaceousGlands

  Public
  Spatial transcriptiomics reveals the role of sebaceous glands in non-communicable inflammatory skin diseases.

  svgsspatialtranscriptomicssebaceousglands+ 1

  svgsspatialtranscriptomicssebaceousglandsglmgampoi

  Python

  •

  Apache License 2.0

  •11 fork in MendenLab/ST_SebaceousGlands•00 stars in MendenLab/ST_SebaceousGlands•00 issues in MendenLab/ST_SebaceousGlands•00 pull requests in MendenLab/ST_SebaceousGlands•Updated Aug 29, 2025Aug 29, 2025

• ST_Mastcells

  Public
  Python

  •

  Apache License 2.0

  •00 forks in MendenLab/ST_Mastcells•00 stars in MendenLab/ST_Mastcells•00 issues in MendenLab/ST_Mastcells•00 pull requests in MendenLab/ST_Mastcells•Updated Aug 29, 2025Aug 29, 2025

• Tear-Fluid-Proteomics

  Public
  Machine learning analysis of tear fluid proteomics from ALS and control patients

  R

  •00 forks in MendenLab/Tear-Fluid-Proteomics•11 star in MendenLab/Tear-Fluid-Proteomics•00 issues in MendenLab/Tear-Fluid-Proteomics•00 pull requests in MendenLab/Tear-Fluid-Proteomics•Updated Jul 16, 2025Jul 16, 2025

• DEx_StemCells_new

  Public
  Ferroptosis and antioxidant effect on stem cells

  stem-cell-differentiationantioxidantstime-dependent+ 5

  stem-cell-differentiationantioxidantstime-dependentvolcano-plotdifferential-expression-analysesr-softwaredeseq2-analysisferroptosis

  R

  •00 forks in MendenLab/DEx_StemCells_new•00 stars in MendenLab/DEx_StemCells_new•00 issues in MendenLab/DEx_StemCells_new•00 pull requests in MendenLab/DEx_StemCells_new•Updated Apr 12, 2025Apr 12, 2025

• Imiquimod_induced_psoriasis

  Public
  This repository contains the code for the biocomputational analysis of the paper "Imiquimod-induced psoriasis depends on antigen specific tissue-resident memory…

  R

  •00 forks in MendenLab/Imiquimod_induced_psoriasis•00 stars in MendenLab/Imiquimod_induced_psoriasis•00 issues in MendenLab/Imiquimod_induced_psoriasis•00 pull requests in MendenLab/Imiquimod_induced_psoriasis•Updated Oct 30, 2024Oct 30, 2024

• premodiALS

  Public
  00 forks in MendenLab/premodiALS•11 star in MendenLab/premodiALS•00 issues in MendenLab/premodiALS•00 pull requests in MendenLab/premodiALS•Updated May 22, 2024May 22, 2024

• tear_fluid_ALS

  Public
  00 forks in MendenLab/tear_fluid_ALS•00 stars in MendenLab/tear_fluid_ALS•00 issues in MendenLab/tear_fluid_ALS•00 pull requests in MendenLab/tear_fluid_ALS•Updated May 22, 2024May 22, 2024

• atypical_Parkinson

  Public
  HTML

  •00 forks in MendenLab/atypical_Parkinson•00 stars in MendenLab/atypical_Parkinson•00 issues in MendenLab/atypical_Parkinson•00 pull requests in MendenLab/atypical_Parkinson•Updated May 13, 2024May 13, 2024

• MAXOMOD_CSF

  Public
  HTML

  •00 forks in MendenLab/MAXOMOD_CSF•00 stars in MendenLab/MAXOMOD_CSF•00 issues in MendenLab/MAXOMOD_CSF•00 pull requests in MendenLab/MAXOMOD_CSF•Updated May 6, 2024May 6, 2024

• emtpb

  Public
  Epithelial-mesenchymal transition (EMT) as predictive biomarker

  R

  •

  MIT License

  •00 forks in MendenLab/emtpb•00 stars in MendenLab/emtpb•00 issues in MendenLab/emtpb•00 pull requests in MendenLab/emtpb•Updated Jan 12, 2024Jan 12, 2024

• OncoBird

  Public
  Predictive biomarker landscape of oncology trials by leveraging mutually exclusive somatic mutations in tumour subtypes for subgroup analysis.

  R

  •

  MIT License

  •00 forks in MendenLab/OncoBird•55 stars in MendenLab/OncoBird•00 issues in MendenLab/OncoBird•00 pull requests in MendenLab/OncoBird•Updated Sep 5, 2023Sep 5, 2023

• MALT1_RNAseq

  Public
  00 forks in MendenLab/MALT1_RNAseq•00 stars in MendenLab/MALT1_RNAseq•00 issues in MendenLab/MALT1_RNAseq•00 pull requests in MendenLab/MALT1_RNAseq•Updated Jul 22, 2023Jul 22, 2023

• pheb

  Public
  Predictive epigenetic drug response biomarkers in high-throughput screens

  HTML

  •00 forks in MendenLab/pheb•00 stars in MendenLab/pheb•00 issues in MendenLab/pheb•00 pull requests in MendenLab/pheb•Updated Jul 20, 2023Jul 20, 2023

• cardiovascularlifespan

  Public
  This repository contains the code for the analysis of the paper "The impact of the cardiovascular component and somatic mutation on ageing".

  R

  •00 forks in MendenLab/cardiovascularlifespan•11 star in MendenLab/cardiovascularlifespan•00 issues in MendenLab/cardiovascularlifespan•00 pull requests in MendenLab/cardiovascularlifespan•Updated Jun 20, 2023Jun 20, 2023