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@KellisLab MIT CompBio Group

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    10 repositories

    • CellProjectedPhenotypes

      Public
      Projecting donor-level phenotypes onto single cells through KNN-neighborhood abundance association analysis.
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 29, 2026Sep 29, 2026

    • scMOSAIC

      Public
      scMOSAIC is an R package for processing targeted PacBio long-read sequencing generated from 10x Genomics Multiome ATAC libraries and linking locus-specific DNA …
      R
      •
      Other
      •0•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • evolutionDeepLearning

      Public
      Analysis scripts associated with "Deep learning predicts cis-regulatory turnover in human evolution". Mangan et al, BioRxiv 2025.
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 21, 2026Aug 21, 2026

    • actionet-r

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 1, 2026Aug 1, 2026

    • deg-pipeline

      Public
      R
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • human_metab

      Public
      R
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • miBrain

      Public
      R
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jan 25, 2024Jan 25, 2024

    • AD_regulome_analysis

      Public
      AD regulome analysis
      R
      •3•16•1•0•Updated Apr 4, 2023Apr 4, 2023

    • scmetab

      Public
      single-cell and bulk RNA-seq pipeline used in the project
      R
      •2•1•0•0•Updated Jan 14, 2023Jan 14, 2023

    • epimap_vis

      Public
      Code for EpiMap data browser
      R
      •4•0•0•0•Updated Sep 15, 2020Sep 15, 2020
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