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    19 repositories

    • ImmuCellAI-2.0

      Public
      ImmuCellAI 2.0 is an advanced bulk transcriptome deconvolution tool that accurately infers the proportions of a comprehensive range of immune cell types, includ…
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 11, 2026Sep 11, 2026

    • OmniTCR

      Public
      OmniTCR is a multimodal foundational large model that integrates peptides, MHC, and TCRs, capable of performing multiple tasks such as TCR recognition predictio…
      Python
      •0•3•0•0•Updated Sep 8, 2026Sep 8, 2026

    • CARE.R

      Public
      CARE.R: R package for cancer-aging drug response analysis
      R
      •
      Other
      •0•0•0•0•Updated Aug 18, 2026Aug 18, 2026

    • ADEPTH_ESCC_PDL1

      Public
      Neoadjuvant anti-PD-L1 immunotherapy combined with chemotherapy in locally advanced esophageal squamous cell carcinoma: a multicenter II trial (ADEPTH)
      R
      •0•0•0•0•Updated Jul 22, 2026Jul 22, 2026

    • ESCC_LDRT_CI

      Public
      Code for processing sequencing samples from esophageal cancer undergoing low-dose radiotherapy, chemotherapy, and immunotherapy.
      R
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • ImmuDef

      Public
      A Novel Method for Anti-infection Immunity Quantitative Analysis
      Python
      •
      MIT License
      •1•2•0•0•Updated Jan 18, 2026Jan 18, 2026

    • CATT

      Public
      An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
      bioinformaticstcrtcr-repertoire
      bioinformaticstcrtcr-repertoirebioinformatics-tool
      Julia
      •2•21•16•0•Updated Nov 19, 2025Nov 19, 2025

    • DeRR

      Public
      A tool for identification Dual-TCR in scRNA-Seq data Topics Resources
      Python
      •1•3•0•0•Updated Nov 19, 2025Nov 19, 2025

    • TCRdb

      Public
      A database of T-cell receptor sequences
      bioinformaticsdatabasetcr
      bioinformaticsdatabasetcrtcr-repertoire
      Python
      •2•11•3•0•Updated Aug 6, 2025Aug 6, 2025

    • STCAT

      Public
      The single T cell annotation tool for scRNA-seq data
      immunetcellscrna-seq-analysis
      immunetcellscrna-seq-analysis
      Jupyter Notebook
      •
      MIT License
      •3•30•6•0•Updated Apr 25, 2025Apr 25, 2025

    • TCellSI

      Public
      The First Innovative Tool to Comprehensively Assess T Cell States
      R
      •
      Other
      •5•115•4•0•Updated Mar 17, 2025Mar 17, 2025

    • Tailor

      Public
      0•0•0•0•Updated Jul 12, 2019Jul 12, 2019

    • AnimalTFDB3

      Public
      update version of AnimalTFDB2.0
      JavaScript
      •1•0•0•0•Updated Aug 21, 2018Aug 21, 2018

    • guo-lab-home

      Public
      Guo Lab Home
      HTML
      •
      MIT License
      •0•1•0•0•Updated Aug 8, 2018Aug 8, 2018

    • EVmiRNA

      Public
      EV miRNA
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 29, 2018Jun 29, 2018

    • miRNASNP

      Public
      mirna snp databases
      PHP
      •
      MIT License
      •2•0•0•0•Updated Mar 25, 2018Mar 25, 2018

    • lncRNASNP2

      Public
      updated version of lncRNASNP
      JavaScript
      •0•0•0•0•Updated Dec 12, 2017Dec 12, 2017

    • SEGreg

      Public
      HTML
      •0•0•0•0•Updated Dec 11, 2017Dec 11, 2017

    • SEGtool

      Public
      SEGtool is an R package with self-adaptive function and high accuracy for specifically expressed gene detection
      tissuegene-expressiondetect-segs
      tissuegene-expressiondetect-segs
      R
      •
      MIT License
      •2•2•1•0•Updated Dec 11, 2017Dec 11, 2017
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