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@GenomicDataInfrastructure Genomic Data Infrastructure

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    47 repositories

    • system-architecture

      Public
      JavaScript
      •1•0•109•2•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-access-management-service

      Public
      HTML
      •0•0•4•11•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-rems-synchronizer

      Public
      Python
      •0•1•1•11•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-ckanext-gdi-userportal

      Public
      Python
      •2•0•8•4•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-dataset-discovery-service

      Public
      Java
      •2•2•3•1•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-frontend

      Public
      TypeScript
      •2•1•8•28•Updated Oct 27, 2026Oct 27, 2026

    • gdi-userportal-deployment

      Public
      This is a deployment example of GDI User Portal, assuming RHEL-based Linux distribution.
      Shell
      •0•1•1•7•Updated Oct 27, 2026Oct 27, 2026

    • keycloak-ga4gh-visa-issuer

      Public
      Java
      •0•0•1•11•Updated Oct 27, 2026Oct 27, 2026

    • starter-kit

      Public
      Starter kit main repo
      1•9•0•1•Updated Oct 26, 2026Oct 26, 2026

    • gdi-userportal-ckan-docker

      Public
      Scripts and images to run CKAN using Docker Compose
      Shell
      •280•1•3•3•Updated Oct 26, 2026Oct 26, 2026

    • gdi-userportal-ckanext-fairdatapoint

      Public
      Python
      •3•0•2•1•Updated Oct 24, 2026Oct 24, 2026

    • oneplusmg-framework

      Public
      HTML
      •5•0•3•0•Updated Oct 23, 2026Oct 23, 2026

    • standard-operating-procedures

      Public
      A repository for managing standard operating procedure (SOP) resources for the GDI project.
      Python
      •
      GNU Affero General Public License v3.0
      •6•10•30•1•Updated Oct 21, 2026Oct 21, 2026

    • gdi-node-standalone

      Public
      A standalone GDI node: a GA4GH Beacon v2.2.0 and a FAIR Data Point in one Rust binary with no database, plus the provider-side dataset tool. Aggregate allele fr…
      bioinformaticsgenomicsga4gh
      bioinformaticsgenomicsga4ghdcat-apcrypt4ghbeacon-v2allele-frequency
      Rust
      •
      Apache License 2.0
      •0•1•1•0•Updated Oct 20, 2026Oct 20, 2026

    • gdi-userportal-ckanext-dcat

      Public
      CKAN ♥ DCAT
      Python
      •155•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • fitsm-process-map

      Public
      JavaScript
      •0•0•0•0•Updated Oct 3, 2026Oct 3, 2026

    • gdi-metadata

      Public
      HTML
      •0•3•6•1•Updated Sep 29, 2026Sep 29, 2026

    • oneplusmg-reference-architecture

      Public
      Reference Architecture for the 1+ Million Genomes initiative. It defines federation-wide business capabilities, services, cross-border processes, and shared int…
      TypeScript
      •0•0•0•0•Updated Sep 18, 2026Sep 18, 2026

    • .github

      Public
      Profile Readme
      0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • api-links

      Public
      Links to definitions and documentation for APIs used within GDI
      1•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • GDI-K8s-Resources

      Public
      Repository for shared development of Kubernetes deployment resources.
      Go Template
      •1•0•1•1•Updated Mar 4, 2026Mar 4, 2026

    • starter-kit-htsget

      Public
      GNU Affero General Public License v3.0
      •0•1•1•0•Updated Feb 20, 2026Feb 20, 2026

    • starter-kit-storage-and-interfaces

      Public
      Shell
      •
      GNU Affero General Public License v3.0
      •3•0•2•0•Updated Feb 20, 2026Feb 20, 2026

    • gdi-mini-node

      Public
      Minimal GDI Node solution in a single application. Covers FAIR Data Point and the two Beacons. The name reflects the minimal API requirements for a GDI node. It…
      Python
      •
      The Unlicense
      •0•1•0•0•Updated Jan 30, 2026Jan 30, 2026

    • starter-kit-beacon2-ri-api

      Public
      Python
      •
      Apache License 2.0
      •1•2•0•0•Updated Dec 22, 2025Dec 22, 2025

    • gdi-userportal-license-report

      Public archive
      OSS Review Toolkit for GDI User Portal.
      0•0•2•0•Updated Dec 17, 2025Dec 17, 2025

    • gdi-userportal-docs

      Public archive
      This repo will become the knowledge base for the User Portal. It will include any detail on how to run the components, architecture and other things.
      HTML
      •0•0•4•0•Updated Dec 16, 2025Dec 16, 2025

    • starter-kit-lsaai

      Public
      LS AAI
      Apache License 2.0
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • validation-framework

      Public
      Framework for specification and example on how to validate data that comes into the GDI infrastructure.
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • starter-kit-lsaai-mock

      Public
      Apache License 2.0
      •1•1•0•0•Updated Oct 24, 2025Oct 24, 2025
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