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@BioCreator BioCreator

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    Repositories list

    50 repositories

    • ReCon

      Public
      [ICML 2023] Contrast with Reconstruct: Contrastive 3D Representation Learning Guided by Generative Pretraining
      Python
      •
      MIT License
      •13•0•0•0•Updated Apr 30, 2023Apr 30, 2023

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •653•0•0•0•Updated Apr 25, 2023Apr 25, 2023

    • DeepLearningExamples

      Public
      State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastruct…
      Jupyter Notebook
      •3.4k•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • awesome-chatgpt-prompts-zh

      Public
      ChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。
      MIT License
      •14k•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • freud

      Public
      Powerful, efficient particle trajectory analysis in scientific Python.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •52•0•0•0•Updated Feb 7, 2022Feb 7, 2022

    • ScaffoldGraph

      Public
      ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX, for the generation and analysis of scaffold networks and scaffold trees…
      Python
      •
      MIT License
      •40•0•0•0•Updated Jan 27, 2022Jan 27, 2022

    • awesome-python-chemistry

      Public
      A curated list of Python packages related to chemistry
      Other
      •236•0•0•0•Updated Jan 21, 2022Jan 21, 2022

    • dash

      Public
      Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.
      Python
      •
      MIT License
      •2.3k•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • qubo-nn

      Public
      Classifying, auto-encoding and reverse-engineering QUBO matrices
      Python
      •
      MIT License
      •17•0•0•0•Updated Sep 29, 2021Sep 29, 2021

    • scikit-opt

      Public
      Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differ…
      Python
      •
      MIT License
      •1.1k•0•0•0•Updated Aug 10, 2021Aug 10, 2021

    • bmtk

      Public
      Brain Modeling Toolkit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •102•0•0•0•Updated Aug 3, 2021Aug 3, 2021

    • ParallelFold

      Public
      A modified version of DeepMind's Alphafold2 to divide CPU part (MSA and template searching) and GPU part (prediction model)
      Python
      •
      MIT License
      •49•0•0•0•Updated Aug 2, 2021Aug 2, 2021

    • AutoDock-Vina

      Public
      AutoDock Vina
      C++
      •
      Apache License 2.0
      •320•0•0•0•Updated Jul 21, 2021Jul 21, 2021

    • ColabFold

      Public
      Making Protein folding accessible to all via Google Colab!
      Jupyter Notebook
      •756•0•0•0•Updated Jul 20, 2021Jul 20, 2021

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •3k•0•0•0•Updated Jul 15, 2021Jul 15, 2021

    • panda3d

      Public
      Powerful, mature open-source cross-platform game engine for Python and C++, developed by Disney and CMU
      C++
      •
      Other
      •902•0•0•0•Updated Jul 8, 2021Jul 8, 2021

    • XiangShan

      Public
      Open-source high-performance RISC-V processor
      Scala
      •
      Other
      •968•0•0•0•Updated Jul 1, 2021Jul 1, 2021

    • LJ-Argon

      Public
      A molecular dynamics simulation of liquid argon using a Lennard-Jones potential.
      Python
      •4•0•0•0•Updated Jun 30, 2021Jun 30, 2021

    • PyAutoFEP

      Public
      PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
      Python
      •84•0•0•0•Updated Jun 25, 2021Jun 25, 2021

    • GeoPPI

      Public
      Python
      •30•0•0•0•Updated Jun 20, 2021Jun 20, 2021

    • galaxy-tools-compchem

      Public
      :mega: Galaxy Tools for Computational Chemistry
      Python
      •
      Apache License 2.0
      •21•0•0•0•Updated Jun 14, 2021Jun 14, 2021

    • Awesome-Bioinformatics

      Public
      A curated list of awesome Bioinformatics libraries and software.
      741•0•0•0•Updated Jun 11, 2021Jun 11, 2021

    • rifdock

      Public
      Rifdock Library for Conformational Search
      C++
      •
      Other
      •55•0•0•0•Updated Jun 6, 2021Jun 6, 2021

    • trRosetta

      Public
      A package to predict protein inter-residue geometries from sequence data
      Python
      •
      MIT License
      •46•0•0•0•Updated May 20, 2021May 20, 2021

    • trDesign

      Public
      trRosetta for protein design
      Jupyter Notebook
      •33•0•0•0•Updated May 15, 2021May 15, 2021

    • Peptides

      Public
      An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
      R
      •24•0•0•0•Updated May 14, 2021May 14, 2021

    • docker-galaxy-stable

      Public
      :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
      Shell
      •
      MIT License
      •139•0•0•0•Updated May 6, 2021May 6, 2021

    • Reinvent-1

      Public
      Python
      •
      MIT License
      •112•1•0•0•Updated Apr 19, 2021Apr 19, 2021

    • modlAMP

      Public
      Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
      Python
      •
      Other
      •20•0•0•0•Updated Feb 25, 2021Feb 25, 2021

    • py4chemoinformatics

      Public
      Python for chemoinformatics
      Jupyter Notebook
      •
      Other
      •89•0•0•0•Updated Feb 10, 2021Feb 10, 2021
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