Issues

• Nextstrain BA.2.86 Tree Consensus Mutations

  neherlab/nextclade_data_workflows#50 · Filter by author ryhisner opened on Jun 3, 2026

• HIV

  neherlab/nextclade_data_workflows#48 · Filter by author AndreaAguadoM opened on Jan 28, 2025

• Rename gene to cds

  neherlab/nextclade_data_workflows#46 · Filter by author corneliusroemer opened on Jan 9, 2024

• Don't count nucleotides 0-100 towards divergence

  neherlab/nextclade_data_workflows#40 · Filter by author corneliusroemer opened on Mar 19, 2023

• ENH: Attach recombinants at most recent common ancestor

  enhancementSARS-CoV-2
  neherlab/nextclade_data_workflows#39 · Filter by author corneliusroemer opened on Mar 18, 2023

• ENH: Add escape score etc as colorings

  neherlab/nextclade_data_workflows#29 · Filter by author corneliusroemer opened on Oct 17, 2022
  1

• MPXV: Add reversions to virus_properties in B.1 build

  neherlab/nextclade_data_workflows#25 · Filter by author corneliusroemer opened on Sep 26, 2022

• MPXV: Remove duplicates (after masking) to reduce tree size

  neherlab/nextclade_data_workflows#24 · Filter by author corneliusroemer opened on Sep 26, 2022
  1

• Prohibit reversions by default, make allowlist for real reversions

  neherlab/nextclade_data_workflows#19 · Filter by author corneliusroemer opened on Aug 23, 2022
  1

• Auto generate constraint.nwk from pango alias file, allow additional resolution

  neherlab/nextclade_data_workflows#18 · Filter by author corneliusroemer opened on Jul 22, 2022

• Use pango defining mutations to improve synthetic lineage curation

  enhancement
  neherlab/nextclade_data_workflows#17 · Filter by author corneliusroemer opened on Jul 22, 2022
  1

• Request: Add vaccine strains and clade defining viruses to NextClade flu dataset

  neherlab/nextclade_data_workflows#11 · Filter by author ammaraziz opened on Jan 19, 2022