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1. Commits on Sep 15, 2026

   • Update README with new sif link

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2. Commits on Aug 3, 2026

   • Redeploy baseline fallback fix after root-causing the prior regression

     

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   • Revert baseline fallback fix after finding it could regress other samples

     

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   • Fix diploid/aneuploid label inversion caused by an unvalidated baseline fallback

     

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3. Commits on Jun 5, 2026

   • Update README.md

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   • Update README.md

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4. Commits on Jun 4, 2026

   • Update README.md

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   • fix: ensure barcodes are always read as strings

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   • Update README.md

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5. Commits on May 1, 2026

   • Update README.md

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   • Update README.md

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   • Update README.md

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   • Update README header formatting

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   • Update README.md

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   • Update README.md

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6. Commits on Apr 30, 2026

   • Update README.md

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   • Update README.md

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   • Update README.md

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7. Commits on Apr 29, 2026

   • Update README.md

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   • initial commit

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8. Commits on Apr 28, 2026

   • update usages

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   • Add cell-number based PC selection

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   • add heatmap custom annotation

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9. Commits on Apr 27, 2026

   • added chromosome labels to the copykat heatmap and the copykat + annotation heatmap

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   • Update adaptive PCA defaults by cell count

     

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10. Commits on Apr 24, 2026

    • Update README.md

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    • Update README with 10X Genomics datasets and comparison

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11. Commits on Apr 23, 2026

    • Update README

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    • Improve README

      

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    • Revise README for clarity on CopyKAT-Python features

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    • PC512 for all cluster

      

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12. Commits on Apr 22, 2026

    • clean

      

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    • Track copykat_py.sif with Git LFS

      

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    • Merge remote initial files

      

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    • Initial commit

      

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