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1. Commits on Aug 13, 2026

   • Add test function for timescales.derive_optimal_regularization

     

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   • Change tsa.extend_timeTrace parameter frac_decade to frac_tmax

     

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   • tsa.extend_timeTrace more intuitive conventions. Improved clearity/style of function comments.

     

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2. Commits on Aug 12, 2026

   • Add/adjust test funtions of tsa.perform_tsa and tsa.derive_tsa_spectrum. Improve clarity of plotting.plot_tsa

     

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3. Commits on Aug 11, 2026

   • Improve Analysis_Tips.md with clearer description

     

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   • Sort input trajectories to avoid misassignments in test functions

     

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   • Add Analysis_Tips.md with additional information

     

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   • Add Analysis_Tips.md with additional information

     

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4. Commits on Mar 13, 2026

   • Add search for regularization parameter. Adjust tutorial accordingly.

     

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5. Commits on Mar 11, 2026

   • Improve Tutorial

     

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   • Dont use tutorial/* for Language statistics

     

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   • Show figures in Tutorial instead of saving them

     

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6. Commits on Mar 10, 2026

   • Show figures in Tutorial instead of saving them

     

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   • Add Tutorial

     

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7. Commits on Mar 9, 2026

   • Further adjustments to __init__ and README.md

     

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   • Further adjustments to __init__ and README.md

     

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   • Adjust __init__ (load classes directly there) and all scripts accordingly

     

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   • Adjust README file. Remove lag_rates parameter from plotting.plot_TSA. Remove return value of timescales.perform_tsa

     

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8. Commits on Mar 3, 2026

   • Add test functions for plotting.py: get_alpha_cmap, pretty_label, _log_axis, save_fig and _color_cycle.

     

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9. Commits on Mar 2, 2026

   • Add test functions for plotting.py plot_TSA, plot_dynamical_content, plot_2D_histogram and get_alpha_cmap

     

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   • Add test for utils derive_dynamical_content, absmax and generate_multi_exp_timetrace

     

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10. Commits on Feb 27, 2026

    • Add test functions for utils.py module (gaussian_smooth, generate_input_trajectories)

      

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    • Add test functions for io.py module. Allow for optional dictionary file name in io.save_json.

      

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11. Commits on Feb 26, 2026

    • Now the testing routine works

      

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    • Now the testing routine works

      

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    • Now the testing routine works

      

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    • Add testing routing for git push. Make generate_input_trajectories use pathlib

      

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    • Add testing routing for git push

      

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    • Add testing routing for git push

      

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    • Add testing routing for git push

      

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    • Add testing routing for git push

      

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    • Add testing routing for git push

      

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12. Commits on Feb 25, 2026

    • Add test function for perform_tsa.

      

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    • Add test function for extend_timeTrace. Remove transformation of 1D arrays in extend_timeTrace as it is already done in load_trajectories

      

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    • Add test for log_space_data. Adjust log_spaced_index_mask that there are definitely no duplicate indices (np.unique to prevent final frame doubled)

      

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