Issues

• use zapline from mne-denoise instead of meegkit?

  mne-tools/mne-bids-pipeline#1306 · Filter by author drammock opened on Sep 3, 2026
  7

• Implement OTP as a preprocessing step for pipeline

  mne-tools/mne-bids-pipeline#1290 · Filter by author nordme opened on Aug 12, 2026

• coregistration / alignment off? [EEG data]

  mne-tools/mne-bids-pipeline#1257 · Filter by author SophieHerbst opened on Jun 12, 2026
  7

• source space step should save morph instance

  easyenhancement
  mne-tools/mne-bids-pipeline#1249 · Filter by author larsoner opened on Jun 3, 2026

• Migrate to MystMD or other provider

  mne-tools/mne-bids-pipeline#1231 · Filter by author larsoner opened on May 4, 2026
  9

• Allow multiple tasks from command line

  mne-tools/mne-bids-pipeline#1211 · Filter by author skjerns opened on Apr 9, 2026
  1

• TODO: better testing for session-specific anatomy

  mne-tools/mne-bids-pipeline#1194 · Filter by author drammock opened on Mar 16, 2026
  1

• Changing compensation grade for CTF data

  mne-tools/mne-bids-pipeline#1193 · Filter by author LeonardoMelloni opened on Mar 13, 2026

• rest_epochs_duration vs. tmax

  mne-tools/mne-bids-pipeline#1173 · Filter by author behinger opened on Jan 28, 2026
  1

• Reorganize files

  mne-tools/mne-bids-pipeline#1171 · Filter by author larsoner opened on Jan 23, 2026
  6

• Re-referencing for raw (continuous) data only seems to be applied in certain cases

  mne-tools/mne-bids-pipeline#1169 · Filter by author jschepers opened on Jan 22, 2026
  5

• Evaluate whether FreeSurfer 8's changed memory requirements could mandate a new config option to restore FS 7 behavior

  mne-tools/mne-bids-pipeline#1122 · Filter by author hoechenberger opened on Oct 21, 2025

• Make it clearer that users may pass a DigMontage as an EEG template montage

  documentation
  mne-tools/mne-bids-pipeline#1102 · Filter by author hoechenberger opened on Jul 31, 2025

• BUG: json_tricks numpy scalars

  mne-tools/mne-bids-pipeline#1094 · Filter by author larsoner opened on Jun 11, 2025
  4

• EHN: changing the MNE-BIDS-Pipeline API

  mne-tools/mne-bids-pipeline#1068 · Filter by author bruAristimunha opened on Mar 9, 2025
  3

• Preventing losing/altering events when downsampling

  mne-tools/mne-bids-pipeline#1028 · Filter by author skjerns opened on Nov 21, 2024
  7

• Handling of missing EOG/ECG channels

  mne-tools/mne-bids-pipeline#1021 · Filter by author skjerns opened on Nov 13, 2024
  9

• Assertion error if raw has HP/LP set, but config specifies lower/higher HP/LP

  mne-tools/mne-bids-pipeline#1008 · Filter by author skjerns opened on Oct 24, 2024
  2

• turn MNE-BIDS pipeline into a BIDS app

  mne-tools/mne-bids-pipeline#1007 · Filter by author Remi-Gau opened on Oct 23, 2024
  5

• Question: How does the _06a2_find_ica_artifacts detect EOG artifacts?

  mne-tools/mne-bids-pipeline#1005 · Filter by author scholzri opened on Oct 21, 2024
  2

• ENH: Add additional plots and customization options to interative mode

  mne-tools/mne-bids-pipeline#1004 · Filter by author scholzri opened on Oct 10, 2024
  1

• ENH: Direct function call for pipeline in Python script

  mne-tools/mne-bids-pipeline#1003 · Filter by author scholzri opened on Oct 10, 2024
  2

• Question about interpolation and big artifact removal

  mne-tools/mne-bids-pipeline#981 · Filter by author juliapottkaemper opened on Aug 1, 2024

• document / provide code on how to update anatomical landmarks after coregistration

  mne-tools/mne-bids-pipeline#956 · Filter by author SophieHerbst opened on Jun 11, 2024

• use tsss with mf_st_duration = signal duration

  mne-tools/mne-bids-pipeline#952 · Filter by author SophieHerbst opened on May 24, 2024
  3