I'm Corentin Meyer, 3rd year PhD Student in biology and artificial intelligence. I'm working on a family of genetic diseases (congenital myopathies) and I'm trying to improve their diagnosis by learning from biopsy reports (NLP on free text) and biopsy images (image deep learning). I also do some teaching of bioinformatics and machine-learning at the Biotechnology School of Strasbourg (ESBS).
My current main projects are MyoQuant🔬, NLMyo🔧 and IMPatienT🗂️
You can find all way to reach me and see my work by accessing my website: cmeyer.fr. I also run a blog where I try to communicate on the things I'm working on at cmeyer.fr/blog/
Here you can find a tree of all my GitHub projects:

🐍 Corentin Meyer
┣━━ 📦 Main Projects
┃   ┣━━ myoquant🔬          - automatically quantify pathological features in muscle fiber histology images
┃   ┣━━ nlmyo🔧             - toolbox to leverage LLMs to exploit histology text reports
┃   ┣━━ impatient🗂️         - web application to digitize, process and explore multimodal patient data
┃   ┣━━ myoquant-streamlit  - web demo of myoquant using streamlit
┃   ┣━━ streamline          - fork of the Streamline autoML pipeline for multiclass classification
┃   ┣━━ primate proteins    - analysis of gene prediction errors in the proteome of 11 primates
┃   ┗━━ drosophila proteins - analysis of gene prediction errors in the proteome of drosophilas
┣━━ 🛠️ Work In Progess
┃   ┣━━ thesis              - my thesis in writing
┃   ┣━━ predex              - train and visualize learning classier systems (lcs) for explainable models
┃   ┗━━ dnd-qa🗡️           - chatbot to answer questions about dungeons and dragons spells
┣━━ 🔗 My Websites
┃   ┣━━ cmeyer.fr           - personal linktree
┃   ┣━━ cmeyer.fr/blog      - personal blog
┃   ┣━━ impatient.lbgi.fr   - impatient web demo
┃   ┣━━ lbgi.fr/MyoQuant    - myoquant web demo
┃   ┣━━ lbgi.fr/NLMyo       - nlmyo web demo
┃   ┗━━ status.cmeyer.fr    - website status page
┣━━ 📚 Teaching and Internships
┃   ┣━━ ml intro lecture    - 1st machine-learning introduction lecture at the biotechnology school of strasbourg (esbs)
┃   ┣━━ ml 1st practical    - 1st machine-learning practical at the esbs
┃   ┣━━ ml 2nd practical    - 2nd machine-learning practical at the esbs
┃   ┣━━ afaf intern         - code for afaf internship
┃   ┗━━ ines intern         - code for ines and jeremy internship
┗━━ ⚰️ Dead and old projects
    ┣━━ pcr-primer-finer    - tool to find optimal primers for pcr
    ┣━━ genetics            - a web application for genetic sequence analysis
    ┣━━ genetics-gui        - a gui app. for genetic sequence analysis
    ┣━━ huntington-rnaseq   - hungtington disease RNA-seq analysis internship
    ┗━━ twitter-bot         - small twitter bot to tweet pictures of cute shibas

Follow me on twitter @corentinm_py and on my website cmeyer.fr