Issues

[Bug/UX] Dependency Fragility & Native Tokenizer Crash (Access Violation) on Windows during standard setup
instadeepai/nucleotide-transformer#149 · opened on Sep 3, 2026
Missing full tutorial for genome annotation
instadeepai/nucleotide-transformer#148 · opened on Aug 24, 2026
Request for correction: Nucleotide Transformer entry in OpenSciFlow model landscape
instadeepai/nucleotide-transformer#146 · opened on Jul 6, 2026
1
Reproducing the homology-aware train/val/test split generation workflow
instadeepai/nucleotide-transformer#145 · opened on Jun 10, 2026
1
Title: Mismatch between “768 + 6 × 128 = 1536” and observed implementation behavior
instadeepai/nucleotide-transformer#144 · opened on Apr 26, 2026
Questions about embedding layer selection and padding strategy in NTv3-650M-pre
instadeepai/nucleotide-transformer#143 · opened on Mar 5, 2026
inclusion of <cls> token in the pretraining procedure
instadeepai/nucleotide-transformer#142 · opened on Mar 4, 2026
Make torch installation optional and remove duplicate jax dependency
instadeepai/nucleotide-transformer#139 · opened on Feb 24, 2026
Make torch installation optional
instadeepai/nucleotide-transformer#138 · opened on Feb 23, 2026
Duplicated jax in install_requires
instadeepai/nucleotide-transformer#137 · opened on Feb 23, 2026
Technical Clarifications on Post-training: Clipping Logic, Stride Geometry, and Metric Scaling (log1p)
instadeepai/nucleotide-transformer#134 · opened on Feb 4, 2026
Low confidence at prediction boundaries
instadeepai/nucleotide-transformer#120 · opened on Nov 20, 2025
2
How to derive a GTF file from the matrix output by SegmentNT?
instadeepai/nucleotide-transformer#118 · opened on Nov 3, 2025
1