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‎README.md‎

Lines changed: 198 additions & 95 deletions
Original file line numberDiff line numberDiff line change
@@ -23,19 +23,19 @@ In each Pediatric schema, valid values, definitions, and registrar notes are pro
2323
For cancer cases diagnosed January 1, 2024 and later, the NCI SEER program will collect the Pediatric Data Collection System fields. The schemas have been
2424
developed to be compatible with the Toronto Staging v1.1 definitions.
2525

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| Version | Release | Algorithm ZIP |
27-
|-----------------|------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------|
26+
| Version | Release | Algorithm ZIP |
27+
|-----------------|--------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------|
2828
| 1.4 | [11.10.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.10.0) | [pediatric-1.4.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.10.0/pediatric-1.4.zip) |
29-
| 1.3 | [11.7.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.7.1) | [pediatric-1.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.7.1/pediatric-1.3.zip) |
30-
| 1.3 (**BETA**) | [11.6.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.6.0) | [pediatric-1.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.6.0/pediatric-1.3.zip) |
31-
| 1.2 (*revised*) | [11.3.2](https://github.com/imsweb/staging-client-java/releases/tag/v11.3.2) | [pediatric-1.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.3.2/pediatric-1.2.zip) |
32-
| 1.2 | [11.2.5](https://github.com/imsweb/staging-client-java/releases/tag/v11.2.5) | [pediatric-1.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.2.5/pediatric-1.2.zip) |
33-
| 1.1 | [11.2.2](https://github.com/imsweb/staging-client-java/releases/tag/v11.2.2) | [pediatric-1.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.2.2/pediatric-1.1.zip) |
34-
| 1.0 | [11.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.0.0) | [pediatric-1.0.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.0.0/pediatric-1.0.zip) |
35-
| 0.5 | [10.2.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.2.0) | [toronto-0.5.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.2.0/toronto-0.5.zip) |
36-
| 0.4 | [10.1.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.1.0) | [toronto-0.4.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.1.0/toronto-0.4.zip) |
37-
| 0.3 | [10.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.0.0) | [toronto-0.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.0.0/toronto-0.3.zip) |
38-
| 0.2 | [9.1](https://github.com/imsweb/staging-client-java/releases/tag/v9.1) | [toronto-0.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v9.1/toronto-0.2.zip) |
29+
| 1.3 | [11.7.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.7.1) | [pediatric-1.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.7.1/pediatric-1.3.zip) |
30+
| 1.3 (**BETA**) | [11.6.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.6.0) | [pediatric-1.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.6.0/pediatric-1.3.zip) |
31+
| 1.2 (*revised*) | [11.3.2](https://github.com/imsweb/staging-client-java/releases/tag/v11.3.2) | [pediatric-1.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.3.2/pediatric-1.2.zip) |
32+
| 1.2 | [11.2.5](https://github.com/imsweb/staging-client-java/releases/tag/v11.2.5) | [pediatric-1.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.2.5/pediatric-1.2.zip) |
33+
| 1.1 | [11.2.2](https://github.com/imsweb/staging-client-java/releases/tag/v11.2.2) | [pediatric-1.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.2.2/pediatric-1.1.zip) |
34+
| 1.0 | [11.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.0.0) | [pediatric-1.0.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.0.0/pediatric-1.0.zip) |
35+
| 0.5 | [10.2.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.2.0) | [toronto-0.5.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.2.0/toronto-0.5.zip) |
36+
| 0.4 | [10.1.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.1.0) | [toronto-0.4.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.1.0/toronto-0.4.zip) |
37+
| 0.3 | [10.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.0.0) | [toronto-0.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.0.0/toronto-0.3.zip) |
38+
| 0.2 | [9.1](https://github.com/imsweb/staging-client-java/releases/tag/v9.1) | [toronto-0.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v9.1/toronto-0.2.zip) |
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4040
### EOD
4141

@@ -56,14 +56,15 @@ been developed to be compatible with the AJCC 8th Edition chapter definitions.
5656
All the standard setting organizations will collect the predictive and prognostic factors through Site Specific Data Items (SSDIs). Unlike the SSFs, these data items have
5757
formats and code structures specific to the data item.
5858

59-
| Version | Release | Algorithm ZIP |
60-
|----------------|------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------|
61-
| 3.3 | [11.7.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.7.1) | [eod_public-3.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.7.1/eod_public-3.3.zip) |
62-
| 3.3 (**BETA**) | [11.6.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.6.0) | [eod_public-3.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.6.0/eod_public-3.3.zip) |
63-
| 3.2 | [11.4.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.4.1) | [eod_public-3.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.3.1/eod_public-3.2.zip) |
64-
| 3.1 | [10.3.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.3.0) | [eod_public-3.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.3.0/eod_public-3.1.zip) |
65-
| 3.0 | [10.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.0.0) | [eod_public-3.0.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.0.0/eod_public-3.0.zip) |
66-
| 2.1 | [8.0](https://github.com/imsweb/staging-client-java/releases/tag/v8.0) | [eod_public-2.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v8.0/eod_public-2.1.zip) |
59+
| Version | Release | Algorithm ZIP |
60+
|----------------|--------------------------------------------------------------------------------|-------------------------------------------------------------------------------------------------------------------|
61+
| 3.4 | [11.11.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.11.0) | [eod_public-3.4.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.11.0/eod_public-3.4.zip) |
62+
| 3.3 | [11.7.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.7.1) | [eod_public-3.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.7.1/eod_public-3.3.zip) |
63+
| 3.3 (**BETA**) | [11.6.0](https://github.com/imsweb/staging-client-java/releases/tag/v11.6.0) | [eod_public-3.3.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.6.0/eod_public-3.3.zip) |
64+
| 3.2 | [11.4.1](https://github.com/imsweb/staging-client-java/releases/tag/v11.4.1) | [eod_public-3.2.zip](https://github.com/imsweb/staging-client-java/releases/download/v11.3.1/eod_public-3.2.zip) |
65+
| 3.1 | [10.3.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.3.0) | [eod_public-3.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.3.0/eod_public-3.1.zip) |
66+
| 3.0 | [10.0.0](https://github.com/imsweb/staging-client-java/releases/tag/v10.0.0) | [eod_public-3.0.zip](https://github.com/imsweb/staging-client-java/releases/download/v10.0.0/eod_public-3.0.zip) |
67+
| 2.1 | [8.0](https://github.com/imsweb/staging-client-java/releases/tag/v8.0) | [eod_public-2.1.zip](https://github.com/imsweb/staging-client-java/releases/download/v8.0/eod_public-2.1.zip) |
6768

6869
### TNM
6970

@@ -108,9 +109,9 @@ Maven
108109
```xml
109110

110111
<dependency>
111-
<groupId>com.imsweb</groupId>
112-
<artifactId>staging-client-java</artifactId>
113-
<version>x.x.x</version>
112+
<groupId>com.imsweb</groupId>
113+
<artifactId>staging-client-java</artifactId>
114+
<version>x.x.x</version>
114115
</dependency>
115116
```
116117

@@ -130,7 +131,7 @@ More detailed documentation can be found in the [Wiki](https://github.com/imsweb
130131
### Get a `Staging` instance
131132

132133
Everything starts with getting an instance of the `Staging` object. You will need an algorithm zip file to load. All avaiable algorithm and version
133-
download links are listed at the top of this file. Creating a staging instance involves loading all the information from the algorithms and is
134+
download links are listed at the top of this file. Creating a staging instance involves loading all the information from the algorithms and is
134135
expensive. The staging instance should be maintained once loaded.
135136

136137
```java
@@ -205,8 +206,12 @@ For Collaborative Staging, use the `CsSchemaLookup` object (each algorithm has t
205206

206207
```java
207208
List<Schema> lookup = staging.lookupSchema(new CsSchemaLookup("C629", "9231"));
208-
assertEquals(1, lookup.size());
209-
assertEquals("testis",lookup.get(0).getId());
209+
210+
assertEquals(1,lookup.size());
211+
212+
assertEquals("testis",lookup.get(0).
213+
214+
getId());
210215
```
211216

212217
If the call returns a single result, then it was successful. If it returns more than one result, then it needs a discriminator. Information about the required discriminator
@@ -216,15 +221,31 @@ sets of discriminators that can be determined based on the result.
216221
```java
217222
// do not supply a discriminator
218223
List<Schema> lookup = staging.lookupSchema(new CsSchemaLookup("C111", "8200"));
219-
assertEquals(2, lookup.size());
220-
for (Schema schema : lookup)
221-
assertTrue(schema.getSchemaDiscriminators().contains(CsStagingData.SSF25_KEY));
224+
225+
assertEquals(2,lookup.size());
226+
for(
227+
Schema schema :lookup)
228+
229+
assertTrue(schema.getSchemaDiscriminators().
230+
231+
contains(CsStagingData.SSF25_KEY));
222232

223233
// supply a discriminator
224-
lookup = staging.lookupSchema(new CsSchemaLookup("C111", "8200", "010"));
225-
assertEquals(1, lookup.size());
226-
assertEquals("nasopharynx", lookup.get(0).getId());
227-
assertEquals(Integer.valueOf(34), lookup.get(0).getSchemaNum());
234+
lookup =staging.
235+
236+
lookupSchema(new CsSchemaLookup("C111", "8200","010"));
237+
238+
assertEquals(1,lookup.size());
239+
240+
assertEquals("nasopharynx",lookup.get(0).
241+
242+
getId());
243+
244+
assertEquals(Integer.valueOf(34),lookup.
245+
246+
get(0).
247+
248+
getSchemaNum());
228249
```
229250

230251
### Calculate stage
@@ -245,79 +266,161 @@ include the ones that are used in the schema being staged.
245266

246267
```java
247268
CsStagingData data = new CsStagingData();
248-
data.setInput(CsInput.PRIMARY_SITE,"C680");
249-
data.setInput(CsInput.HISTOLOGY,"8000");
250-
data.setInput(CsInput.BEHAVIOR,"3");
251-
data.setInput(CsInput.GRADE,"9");
252-
data.setInput(CsInput.DX_YEAR,"2013");
253-
data.setInput(CsInput.CS_VERSION_ORIGINAL,"020550");
254-
data.setInput(CsInput.TUMOR_SIZE,"075");
255-
data.setInput(CsInput.EXTENSION,"100");
256-
data.setInput(CsInput.EXTENSION_EVAL,"9");
257-
data.setInput(CsInput.LYMPH_NODES,"100");
258-
data.setInput(CsInput.LYMPH_NODES_EVAL,"9");
259-
data.setInput(CsInput.REGIONAL_NODES_POSITIVE,"99");
260-
data.setInput(CsInput.REGIONAL_NODES_EXAMINED,"99");
261-
data.setInput(CsInput.METS_AT_DX,"10");
262-
data.setInput(CsInput.METS_EVAL,"9");
263-
data.setInput(CsInput.LVI,"9");
264-
data.setInput(CsInput.AGE_AT_DX,"060");
265-
data.setSsf(1,"020");
269+
data.
270+
271+
setInput(CsInput.PRIMARY_SITE,"C680");
272+
data.
273+
274+
setInput(CsInput.HISTOLOGY,"8000");
275+
data.
276+
277+
setInput(CsInput.BEHAVIOR,"3");
278+
data.
279+
280+
setInput(CsInput.GRADE,"9");
281+
data.
282+
283+
setInput(CsInput.DX_YEAR,"2013");
284+
data.
285+
286+
setInput(CsInput.CS_VERSION_ORIGINAL,"020550");
287+
data.
288+
289+
setInput(CsInput.TUMOR_SIZE,"075");
290+
data.
291+
292+
setInput(CsInput.EXTENSION,"100");
293+
data.
294+
295+
setInput(CsInput.EXTENSION_EVAL,"9");
296+
data.
297+
298+
setInput(CsInput.LYMPH_NODES,"100");
299+
data.
300+
301+
setInput(CsInput.LYMPH_NODES_EVAL,"9");
302+
data.
303+
304+
setInput(CsInput.REGIONAL_NODES_POSITIVE,"99");
305+
data.
306+
307+
setInput(CsInput.REGIONAL_NODES_EXAMINED,"99");
308+
data.
309+
310+
setInput(CsInput.METS_AT_DX,"10");
311+
data.
312+
313+
setInput(CsInput.METS_EVAL,"9");
314+
data.
315+
316+
setInput(CsInput.LVI,"9");
317+
data.
318+
319+
setInput(CsInput.AGE_AT_DX,"060");
320+
data.
321+
322+
setSsf(1,"020");
266323

267324
// perform the staging
268-
staging.stage(data);
325+
staging.
326+
327+
stage(data);
328+
269329
assertEquals(Result.STAGED, data.getResult());
270-
assertEquals("urethra", data.getSchemaId());
271-
assertEquals(0, data.getErrors().size());
272-
assertEquals(37, data.getPath().size());
330+
331+
assertEquals("urethra",data.getSchemaId());
332+
333+
assertEquals(0,data.getErrors().
334+
335+
size());
336+
337+
assertEquals(37,data.getPath().
338+
339+
size());
273340

274341
// check output
275-
assertEquals("129", data.getOutput(CsOutput.SCHEMA_NUMBER));
276-
assertEquals("020550", data.getOutput(CsOutput.CSVER_DERIVED));
342+
assertEquals("129",data.getOutput(CsOutput.SCHEMA_NUMBER));
343+
344+
assertEquals("020550",data.getOutput(CsOutput.CSVER_DERIVED));
277345

278346
// AJCC 6
279-
assertEquals("T1", data.getOutput(CsOutput.AJCC6_T));
280-
assertEquals("c", data.getOutput(CsOutput.AJCC6_TDESCRIPTOR));
281-
assertEquals("N1", data.getOutput(CsOutput.AJCC6_N));
282-
assertEquals("c", data.getOutput(CsOutput.AJCC6_NDESCRIPTOR));
283-
assertEquals("M1", data.getOutput(CsOutput.AJCC6_M));
284-
assertEquals("c", data.getOutput(CsOutput.AJCC6_MDESCRIPTOR));
285-
assertEquals("IV", data.getOutput(CsOutput.AJCC6_STAGE));
286-
assertEquals("10", data.getOutput(CsOutput.STOR_AJCC6_T));
287-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC6_TDESCRIPTOR));
288-
assertEquals("10", data.getOutput(CsOutput.STOR_AJCC6_N));
289-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC6_NDESCRIPTOR));
290-
assertEquals("10", data.getOutput(CsOutput.STOR_AJCC6_M));
291-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC6_MDESCRIPTOR));
292-
assertEquals("70", data.getOutput(CsOutput.STOR_AJCC6_STAGE));
347+
assertEquals("T1",data.getOutput(CsOutput.AJCC6_T));
348+
349+
assertEquals("c",data.getOutput(CsOutput.AJCC6_TDESCRIPTOR));
350+
351+
assertEquals("N1",data.getOutput(CsOutput.AJCC6_N));
352+
353+
assertEquals("c",data.getOutput(CsOutput.AJCC6_NDESCRIPTOR));
354+
355+
assertEquals("M1",data.getOutput(CsOutput.AJCC6_M));
356+
357+
assertEquals("c",data.getOutput(CsOutput.AJCC6_MDESCRIPTOR));
358+
359+
assertEquals("IV",data.getOutput(CsOutput.AJCC6_STAGE));
360+
361+
assertEquals("10",data.getOutput(CsOutput.STOR_AJCC6_T));
362+
363+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC6_TDESCRIPTOR));
364+
365+
assertEquals("10",data.getOutput(CsOutput.STOR_AJCC6_N));
366+
367+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC6_NDESCRIPTOR));
368+
369+
assertEquals("10",data.getOutput(CsOutput.STOR_AJCC6_M));
370+
371+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC6_MDESCRIPTOR));
372+
373+
assertEquals("70",data.getOutput(CsOutput.STOR_AJCC6_STAGE));
293374

294375
// AJCC 7
295-
assertEquals("T1", data.getOutput(CsOutput.AJCC7_T));
296-
assertEquals("c", data.getOutput(CsOutput.AJCC7_TDESCRIPTOR));
297-
assertEquals("N1", data.getOutput(CsOutput.AJCC7_N));
298-
assertEquals("c", data.getOutput(CsOutput.AJCC7_NDESCRIPTOR));
299-
assertEquals("M1", data.getOutput(CsOutput.AJCC7_M));
300-
assertEquals("c", data.getOutput(CsOutput.AJCC7_MDESCRIPTOR));
301-
assertEquals("IV", data.getOutput(CsOutput.AJCC7_STAGE));
302-
assertEquals("100", data.getOutput(CsOutput.STOR_AJCC7_T));
303-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC6_TDESCRIPTOR));
304-
assertEquals("100", data.getOutput(CsOutput.STOR_AJCC7_N));
305-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC7_NDESCRIPTOR));
306-
assertEquals("100", data.getOutput(CsOutput.STOR_AJCC7_M));
307-
assertEquals("c", data.getOutput(CsOutput.STOR_AJCC7_MDESCRIPTOR));
308-
assertEquals("700", data.getOutput(CsOutput.STOR_AJCC7_STAGE));
376+
assertEquals("T1",data.getOutput(CsOutput.AJCC7_T));
377+
378+
assertEquals("c",data.getOutput(CsOutput.AJCC7_TDESCRIPTOR));
379+
380+
assertEquals("N1",data.getOutput(CsOutput.AJCC7_N));
381+
382+
assertEquals("c",data.getOutput(CsOutput.AJCC7_NDESCRIPTOR));
383+
384+
assertEquals("M1",data.getOutput(CsOutput.AJCC7_M));
385+
386+
assertEquals("c",data.getOutput(CsOutput.AJCC7_MDESCRIPTOR));
387+
388+
assertEquals("IV",data.getOutput(CsOutput.AJCC7_STAGE));
389+
390+
assertEquals("100",data.getOutput(CsOutput.STOR_AJCC7_T));
391+
392+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC6_TDESCRIPTOR));
393+
394+
assertEquals("100",data.getOutput(CsOutput.STOR_AJCC7_N));
395+
396+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC7_NDESCRIPTOR));
397+
398+
assertEquals("100",data.getOutput(CsOutput.STOR_AJCC7_M));
399+
400+
assertEquals("c",data.getOutput(CsOutput.STOR_AJCC7_MDESCRIPTOR));
401+
402+
assertEquals("700",data.getOutput(CsOutput.STOR_AJCC7_STAGE));
309403

310404
// Summary Stage
311-
assertEquals("L", data.getOutput(CsOutput.SS1977_T));
312-
assertEquals("RN", data.getOutput(CsOutput.SS1977_N));
313-
assertEquals("D", data.getOutput(CsOutput.SS1977_M));
314-
assertEquals("D", data.getOutput(CsOutput.SS1977_STAGE));
315-
assertEquals("L", data.getOutput(CsOutput.SS2000_T));
316-
assertEquals("RN", data.getOutput(CsOutput.SS2000_N));
317-
assertEquals("D", data.getOutput(CsOutput.SS2000_M));
318-
assertEquals("D", data.getOutput(CsOutput.SS2000_STAGE));
319-
assertEquals("7", data.getOutput(CsOutput.STOR_SS1977_STAGE));
320-
assertEquals("7", data.getOutput(CsOutput.STOR_SS2000_STAGE));
405+
assertEquals("L",data.getOutput(CsOutput.SS1977_T));
406+
407+
assertEquals("RN",data.getOutput(CsOutput.SS1977_N));
408+
409+
assertEquals("D",data.getOutput(CsOutput.SS1977_M));
410+
411+
assertEquals("D",data.getOutput(CsOutput.SS1977_STAGE));
412+
413+
assertEquals("L",data.getOutput(CsOutput.SS2000_T));
414+
415+
assertEquals("RN",data.getOutput(CsOutput.SS2000_N));
416+
417+
assertEquals("D",data.getOutput(CsOutput.SS2000_M));
418+
419+
assertEquals("D",data.getOutput(CsOutput.SS2000_STAGE));
420+
421+
assertEquals("7",data.getOutput(CsOutput.STOR_SS1977_STAGE));
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assertEquals("7",data.getOutput(CsOutput.STOR_SS2000_STAGE));
321424
```
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## About SEER

‎pom.xml‎

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@@ -5,7 +5,7 @@
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<groupId>com.imsweb</groupId>
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<artifactId>staging-client-java</artifactId>
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<version>11.10.0</version>
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<version>11.11.0</version>
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<packaging>jar</packaging>
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<name>Staging Java Client</name>

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