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566 lines (507 loc) · 14.4 KB
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# SPDX-License-Identifier: Apache-2.0
# SPDX-FileCopyrightText: Copyright The Lance Authors
import shutil
from pathlib import Path
from typing import NamedTuple, Union
import lance
import numpy as np
import pyarrow as pa
import pyarrow.compute as pc
import pytest
N_DIMS = 768
NUM_ROWS = 100_000
NEW_ROWS = 10_000
def find_or_clean(dataset_path: Path) -> Union[lance.LanceDataset, None]:
if dataset_path.exists():
try:
dataset = lance.LanceDataset(dataset_path)
except Exception:
pass
else:
return dataset
# clear any old data there
if dataset_path.exists():
shutil.rmtree(dataset_path)
return None
GENRES = [
"action",
"comedy",
"drama",
"horror",
"romance",
"thriller",
"western",
"sci-fi",
"fantasy",
"documentary",
]
def create_table(num_rows, offset) -> pa.Table:
values = pc.random(num_rows * N_DIMS).cast(pa.float32())
vectors = pa.FixedSizeListArray.from_arrays(values, N_DIMS)
filterable = pa.array(range(offset, offset + num_rows))
categories = pa.array(np.random.randint(0, 100, num_rows))
genres_values = pa.array(np.random.choice(GENRES, num_rows * 3))
genre_offsets = pa.array(np.arange(0, (num_rows + 1) * 3, 3, dtype=np.int32))
genres = pa.ListArray.from_arrays(genre_offsets, genres_values)
return pa.table(
{
"vector": vectors,
"filterable": filterable,
"category": categories,
"category_no_index": categories,
"genres": genres,
}
)
def create_base_dataset(data_dir: Path) -> lance.LanceDataset:
tmp_path = data_dir / "search_dataset"
dataset = find_or_clean(tmp_path)
if dataset:
return dataset
rows_remaining = NUM_ROWS
offset = 0
dataset = None
while rows_remaining > 0:
next_batch_length = min(rows_remaining, 1024 * 1024)
rows_remaining -= next_batch_length
table = create_table(next_batch_length, offset)
if offset == 0:
dataset = lance.write_dataset(table, tmp_path, use_legacy_format=False)
else:
dataset = lance.write_dataset(
table, tmp_path, mode="append", use_legacy_format=False
)
offset += next_batch_length
dataset.create_index(
column="vector",
index_type="IVF_PQ",
metric_type="L2",
num_partitions=32,
num_sub_vectors=16,
num_bits=8,
)
dataset.create_scalar_index("filterable", "BTREE")
dataset.create_scalar_index("category", "BITMAP")
dataset.create_scalar_index("genres", "LABEL_LIST")
return lance.dataset(tmp_path, index_cache_size=64 * 1024)
def create_delete_dataset(data_dir):
tmp_path = data_dir / "search_dataset_with_delete"
dataset = find_or_clean(tmp_path)
if dataset:
return dataset
clean_path = data_dir / "search_dataset"
shutil.copytree(clean_path, tmp_path)
dataset = lance.dataset(tmp_path)
dataset.delete("filterable % 2 != 0")
return lance.dataset(tmp_path, index_cache_size=64 * 1024)
def create_new_rows_dataset(data_dir):
tmp_path = data_dir / "search_dataset_with_new_rows"
dataset = find_or_clean(tmp_path)
if dataset:
return dataset
clean_path = data_dir / "search_dataset"
shutil.copytree(clean_path, tmp_path)
dataset = lance.dataset(tmp_path)
table = create_table(NEW_ROWS, offset=NUM_ROWS)
dataset = lance.write_dataset(table, tmp_path, mode="append")
return lance.dataset(tmp_path, index_cache_size=64 * 1024)
class Datasets(NamedTuple):
# A clean dataset
clean: lance.LanceDataset
# A dataset where every fragment has a deletion vector
with_delete_files: lance.LanceDataset
# A dataset that has new, unindexed rows
with_new_rows: lance.LanceDataset
@pytest.fixture(scope="module")
def datasets(data_dir: Path) -> Datasets:
return Datasets(
clean=create_base_dataset(data_dir),
with_delete_files=create_delete_dataset(data_dir),
with_new_rows=create_new_rows_dataset(data_dir),
)
@pytest.fixture(scope="module", params=Datasets._fields)
def test_dataset(datasets: Datasets, request) -> lance.LanceDataset:
return datasets.__getattribute__(request.param)
@pytest.mark.benchmark(group="query_ann")
def test_knn_search(test_dataset, benchmark):
q = pc.random(N_DIMS).cast(pa.float32())
result = benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
use_index=False,
),
)
assert result.num_rows > 0
@pytest.mark.benchmark(group="query_ann")
def test_ann_no_refine(test_dataset, benchmark):
q = pc.random(N_DIMS).cast(pa.float32())
result = benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
)
assert result.num_rows > 0
@pytest.mark.benchmark(group="query_ann")
def test_ann_with_refine(test_dataset, benchmark):
q = pc.random(N_DIMS).cast(pa.float32())
result = benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
refine_factor=2,
),
)
assert result.num_rows > 0
@pytest.mark.benchmark(group="query_ann")
@pytest.mark.parametrize("selectivity", (0.25, 0.75))
@pytest.mark.parametrize("prefilter", (False, True))
@pytest.mark.parametrize("use_index", (False, True))
def test_filtered_search(test_dataset, benchmark, selectivity, prefilter, use_index):
q = pc.random(N_DIMS).cast(pa.float32())
threshold = int(round(selectivity * NUM_ROWS))
result = benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
use_index=use_index,
),
prefilter=prefilter,
filter=f"filterable <= {threshold}",
)
# With post-filtering it is possible we don't get any results
if prefilter:
assert result.num_rows > 0
@pytest.mark.benchmark(group="query_ann")
@pytest.mark.parametrize(
"filter",
(
None,
"filterable = 0",
"filterable != 0",
"filterable IN (0)",
"filterable NOT IN (0)",
"filterable != 0 AND filterable != 5000 AND filterable != 10000",
"filterable NOT IN (0, 5000, 10000)",
"filterable < 5000",
"filterable > 5000",
),
ids=[
"none",
"equality",
"not_equality",
"in_list_one",
"not_in_list_one",
"not_equality_and_chain",
"not_in_list_three",
"less_than_selective",
"greater_than_not_selective",
],
)
def test_btree_index_prefilter(test_dataset, benchmark, filter: str):
q = pc.random(N_DIMS).cast(pa.float32())
if filter is None:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
)
else:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
prefilter=True,
filter=filter,
)
@pytest.mark.benchmark(group="query_no_vec")
@pytest.mark.parametrize(
"filter",
(
None,
"filterable = 0",
"filterable != 0",
"filterable IN (0)",
"filterable IN (0, 5000, 10000)",
"filterable NOT IN (0)",
"filterable != 0 AND filterable != 5000 AND filterable != 10000",
"filterable NOT IN (0, 5000, 10000)",
"filterable < 5000",
"filterable > 5000",
),
ids=[
"none",
"equality",
"not_equality",
"in_list_one",
"in_list_three",
"not_in_list_one",
"not_equality_and_chain",
"not_in_list_three",
"less_than_selective",
"greater_than_not_selective",
],
)
def test_btree_index_search(test_dataset, benchmark, filter: str):
if filter is None:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
)
else:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
prefilter=True,
filter=filter,
)
@pytest.mark.benchmark(group="query_ann")
@pytest.mark.parametrize(
"filter",
(
None,
"category = 0",
"category != 0",
"category IN (0)",
"category NOT IN (0)",
"category != 0 AND category != 3 AND category != 7",
"category NOT IN (0, 3, 7)",
"category < 5",
"category > 5",
),
ids=[
"none",
"equality",
"not_equality",
"in_list_one",
"not_in_list_one",
"not_equality_and_chain",
"not_in_list_three",
"less_than_selective",
"greater_than_not_selective",
],
)
def test_bitmap_index_prefilter(test_dataset, benchmark, filter: str):
q = pc.random(N_DIMS).cast(pa.float32())
if filter is None:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
)
else:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
prefilter=True,
filter=filter,
)
@pytest.mark.benchmark(group="query_no_vec")
@pytest.mark.parametrize(
"filter",
(
None,
"category = 0",
"category != 0",
"category IN (0)",
"category IN (0, 3, 7)",
"category NOT IN (0)",
"category != 0 AND category != 3 AND category != 7",
"category NOT IN (0, 3, 7)",
"category < 5",
"category > 5",
),
ids=[
"none",
"equality",
"not_equality",
"in_list_one",
"in_list_three",
"not_in_list_one",
"not_equality_and_chain",
"not_in_list_three",
"less_than_selective",
"greater_than_not_selective",
],
)
def test_bitmap_index_search(test_dataset, benchmark, filter: str):
if filter is None:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
)
else:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
prefilter=True,
filter=filter,
)
@pytest.mark.benchmark(group="query_ann")
@pytest.mark.parametrize(
"filter",
(
None,
"array_has_any(genres, ['comedy'])",
),
ids=["none", "one"],
)
def test_label_list_index_prefilter(test_dataset, benchmark, filter: str):
q = pc.random(N_DIMS).cast(pa.float32())
if filter is None:
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
)
else:
print(
test_dataset.scanner(
columns=[],
with_row_id=True,
nearest=dict(column="vector", q=q, k=100, nprobes=10),
prefilter=True,
filter=filter,
).explain_plan(True)
)
benchmark(
test_dataset.to_table,
columns=[],
with_row_id=True,
nearest=dict(
column="vector",
q=q,
k=100,
nprobes=10,
),
prefilter=True,
filter=filter,
)
@pytest.mark.benchmark(group="late_materialization")
@pytest.mark.parametrize(
"use_index",
(False, True),
ids=["no_index", "with_index"],
)
def test_late_materialization(test_dataset, benchmark, use_index):
column = "category" if use_index else "category_no_index"
print(
test_dataset.scanner(
columns=["vector"],
filter=f"{column} = 0",
batch_size=32,
).explain_plan(True)
)
benchmark(
test_dataset.to_table,
columns=["vector"],
filter=f"{column} = 0",
batch_size=32,
)
@pytest.fixture(scope="module")
def test_geo_dataset(tmpdir_factory):
from geoarrow.rust.core import (
point,
points,
)
num_rows = 1_000_000
points_2d = points([np.random.randn(num_rows), np.random.randn(num_rows)])
schema = pa.schema(
[
pa.field(point("xy")).with_name("points"),
]
)
table = pa.Table.from_arrays([points_2d], schema=schema)
uri = str(tmpdir_factory.mktemp("test_geo_dataset"))
lance.write_dataset(table, uri)
ds = lance.dataset(uri)
return ds
@pytest.mark.benchmark(group="geo")
@pytest.mark.parametrize(
"use_index",
(False, True),
ids=["no_index", "with_index"],
)
def test_geo_rtree(test_geo_dataset, benchmark, use_index):
if use_index:
test_geo_dataset.create_scalar_index(
column="points",
index_type="RTREE",
replace=True,
)
print(
test_geo_dataset.scanner(
columns=["points"],
filter="""
St_Contains(points,
ST_GeomFromText('POLYGON (( 0 0, 2 0, 0 2, 2 2, 0 0 ))'))
""",
batch_size=32,
use_scalar_index=use_index,
).explain_plan(True)
)
benchmark(
test_geo_dataset.to_table,
columns=["points"],
filter="""
St_Contains(points,
ST_GeomFromText('POLYGON (( 0 0, 2 0, 0 2, 2 2, 0 0 ))'))
""",
batch_size=32,
use_scalar_index=use_index,
)