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'superclass mismatch for class Queue (TypeError)' when running analyze.rb #9
Description
When running the analyze.rb script, I get a TypeError:
$ ./analyze.rb
./analyze.rb:214:in `<main>': superclass mismatch for class Queue (TypeError)
System info:
$ ruby -v
ruby 2.2.3p173 (2015-08-18 revision 51636) [x86_64-linux]
$ uname -a
Linux <hostname> 2.6.32-642.4.2.el6.x86_64 #1 SMP Mon Aug 15 02:06:41 EDT 2016 x86_64 x86_64 x86_64 GNU/Linux
$ head -n1 /etc/issue
Red Hat Enterprise Linux Server release 6.8 (Santiago)
If I downgrade my ruby version to 1.9.3, the TypeError dissapears...
$ conda uninstall ruby
Fetching package metadata .......
Solving package specifications: ..........
Package plan for package removal in environment /tools/general/app/anaconda-python-3.4/envs/accounting:
The following packages will be REMOVED:
ruby: 2.2.3-0 bioconda
Proceed ([y]/n)? y
Unlinking packages ...
[ COMPLETE ]|###############################################################################################################| 100%
$ conda install -c kalefranz ruby=1.9
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /tools/general/app/anaconda-python-3.4/envs/accounting:
The following packages will be downloaded:
package | build
---------------------------|-----------------
libffi-3.2.1 | 1 38 KB
ncurses-5.9 | 5 640 KB kalefranz
ruby-1.9.3.551 | 0 12.8 MB kalefranz
------------------------------------------------------------
Total: 13.4 MB
The following NEW packages will be INSTALLED:
libffi: 3.2.1-1
ncurses: 5.9-5 kalefranz
ruby: 1.9.3.551-0 kalefranz
Proceed ([y]/n)? y
Fetching packages ...
libffi-3.2.1-1 100% |############################################################################################| Time: 0:00:00 852.02 kB/s
ncurses-5.9-5. 100% |############################################################################################| Time: 0:00:01 504.77 kB/s
ruby-1.9.3.551 100% |############################################################################################| Time: 0:00:22 606.26 kB/s
Extracting packages ...
[ COMPLETE ]|###############################################################################################################| 100%
Linking packages ...
[ COMPLETE ]|###############################################################################################################| 100%
$ ruby -v
ruby 1.9.3p551 (2014-11-13 revision 48407) [x86_64-linux]
$ ruby ./analyze.rb
usage: analyze.rb <options> accounting_file
-help
-r records table
-u users table
-h hosts table
-par parallel environment table
-q queues table
-p projects table
-c categories table
-ts timesteps table
-ts_c categories per timestep
-ts_j jobs per timestep
-t "first"|<first> "last"|<last> full analysis, but print these timesteps only
...but as soon as I try to process the accounting file, other errors pop up:
$ ./analyze.rb -ts /gridware/uge/default//common/accounting
invalid record 14473350 submitted 1503752102682 started 0 ended 0 wallclock 0
invalid record 14473350 submitted 1503752102682 started 0 ended 0 wallclock 0
invalid record 14473350 submitted 1503752102682 started 0 ended 0 wallclock 0
invalid record 14473350 submitted 1503752102682 started 0 ended 0 wallclock 0
invalid record 14473350 submitted 1503752102682 started 0 ended 0 wallclock 0
./analyze.rb:151:in `split': invalid byte sequence in UTF-8 (ArgumentError)
from ./analyze.rb:151:in `block in initialize'
from ./analyze.rb:149:in `each_line'
from ./analyze.rb:149:in `initialize'
from ./analyze.rb:557:in `new'
from ./analyze.rb:557:in `read_records'
from ./analyze.rb:774:in `<main>'
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