Issues

• Plans to allow matplotlib >= 3.9?

  deeptools/pyGenomeTracks#494 · Filter by author verdurin opened on Feb 23, 2026
  4

• Suggestion to improve --BED option

  enhancement
  deeptools/pyGenomeTracks#490 · Filter by author marcusnygaard opened on Jun 11, 2025
  2

• Generate a Whole Genome View

  enhancement
  deeptools/pyGenomeTracks#482 · Filter by author try-hunter opened on Sep 2, 2024
  1

• Dependency Conflict: Installation of pyGenomeTracks Causes ResolutionImpossible Error

  deeptools/pyGenomeTracks#480 · Filter by author im-habib opened on Jun 28, 2024
  4

• highlight specific exon with different color

  deeptools/pyGenomeTracks#479 · Filter by author ssssyq1123 opened on Jun 19, 2024
  1

• Manhattan

  deeptools/pyGenomeTracks#466 · Filter by author diegohernansanchez opened on Dec 21, 2023
  3

• Changing the font type

  enhancement
  deeptools/pyGenomeTracks#460 · Filter by author ryansohny opened on Jul 26, 2023
  7

• grouped scaling for bigwick/graph tracks

  enhancement
  deeptools/pyGenomeTracks#458 · Filter by author ralfgilsbach opened on Jul 14, 2023
  1

• Directionality of links

  enhancement
  deeptools/pyGenomeTracks#454 · Filter by author jn21 opened on Jul 4, 2023
  4

• Choosing matrix normalization method for .cool files

  enhancement
  deeptools/pyGenomeTracks#441 · Filter by author rikrdo89 opened on Mar 19, 2023
  4

• scalebar for hic matrix gets cutoff

  bug
  deeptools/pyGenomeTracks#440 · Filter by author rikrdo89 opened on Mar 18, 2023
  3

• x-axis break

  enhancement
  deeptools/pyGenomeTracks#402 · Filter by author nzx9581 opened on Jun 14, 2022
  1

• hicPlotTADs in circos

  deeptools/pyGenomeTracks#397 · Filter by author mujahida87 opened on Mar 4, 2022
  4

• Implement RNA-DNA interaction tracks

  enhancement
  deeptools/pyGenomeTracks#355 · Filter by author lldelisle opened on Aug 17, 2021

• Feature request: grouped scaling

  enhancement
  deeptools/pyGenomeTracks#321 · Filter by author SDeans0 opened on Jan 14, 2021
  5

• Is it possible to define variables in the ini configuration files to be re-used by the tracks

  enhancement
  deeptools/pyGenomeTracks#316 · Filter by author rikrdo89 opened on Nov 18, 2020
  5

• region per track instead of global definition

  enhancement
  deeptools/pyGenomeTracks#234 · Filter by author joachimwolff opened on May 11, 2020
  1

• Define default section in tracks.ini

  enhancement
  deeptools/pyGenomeTracks#219 · Filter by author thomasmanke opened on May 5, 2020
  2

• TODO list

  enhancement
  deeptools/pyGenomeTracks#119 · Filter by author lldelisle opened on Oct 25, 2019
  15

• [featRequest] BamTrack

  deeptools/pyGenomeTracks#71 · Filter by author shouldsee opened on May 2, 2019

• Vertical plots

  deeptools/pyGenomeTracks#40 · Filter by author Phlya opened on Aug 9, 2018

• [Feature Request]: call pyGenomeTracks from python without a .ini file (or document this ability)

  enhancement
  deeptools/pyGenomeTracks#20 · Filter by author alexlenail opened on Mar 27, 2018
  23