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name: Build and Test Slycot
on:
push:
pull_request:
paths-ignore:
- '.gitignore'
- 'AUTHORS'
- 'COPYING'
- 'gpl-2.0.txt'
- 'MANIFEST.in'
- 'README.rst'
jobs:
build-setup:
# Super fast sniff build. If this fails, don't start the other jobs
name: Build sdist on Ubuntu
runs-on: ubuntu-latest
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
with:
fetch-depth: 0
submodules: 'recursive'
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.9
- name: Setup Ubuntu
run: |
sudo apt-get -y install gfortran cmake --fix-missing
sudo apt-get -y install libblas-dev liblapack-dev
pip install scikit-build numpy scipy pytest
- name: Create Slycot sdist
run: python setup.py sdist
- name: Install Slycot sdist
run: |
mkdir cleancwd
cd cleancwd
tar xfz ../dist/slycot-*.tar.gz
cd slycot-*
python setup.py install
- name: Run tests
run: pytest
build-pip:
name: Build pip Py${{ matrix.python }}, ${{ matrix.os }}, ${{ matrix.bla_vendor}} BLA_VENDOR
runs-on: ${{ matrix.os }}-latest
needs: build-setup
strategy:
fail-fast: false
matrix:
os:
- 'ubuntu'
- 'macos'
python:
- '3.7'
- '3.9'
- '3.10'
bla_vendor: [ 'unset' ]
include:
- os: 'ubuntu'
python: '3.9'
bla_vendor: 'Generic'
- os: 'ubuntu'
python: '3.9'
bla_vendor: 'OpenBLAS'
- os: 'macos'
python: '3.9'
bla_vendor: 'Apple'
- os: 'macos'
python: '3.9'
bla_vendor: 'Generic'
- os: 'macos'
python: '3.9'
bla_vendor: 'OpenBLAS'
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
with:
fetch-depth: 0
submodules: 'recursive'
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}
- name: Setup Ubuntu
if: matrix.os == 'ubuntu'
run: |
sudo apt-get -y update
sudo apt-get -y install gfortran cmake --fix-missing
case ${{ matrix.bla_vendor }} in
unset | Generic ) sudo apt-get -y install libblas-dev liblapack-dev ;;
OpenBLAS ) sudo apt-get -y install libopenblas-dev ;;
*)
echo "bla_vendor option ${{ matrix.bla_vendor }} not supported"
exit 1 ;;
esac
- name: Setup macOS
if: matrix.os == 'macos'
run: |
case ${{ matrix.bla_vendor }} in
unset | Generic | Apple ) ;; # Found in system
OpenBLAS )
brew install openblas
echo "BLAS_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV
echo "LAPACK_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV
;;
*)
echo "bla_vendor option ${{ matrix.bla_vendor }} not supported"
exit 1 ;;
esac
echo "FC=gfortran-10" >> $GITHUB_ENV
- name: Build wheel
env:
BLA_VENDOR: ${{ matrix.bla_vendor }}
CMAKE_GENERATOR: Unix Makefiles
run: |
if [[ $BLA_VENDOR = unset ]]; then unset BLA_VENDOR; fi
python -m pip install --upgrade pip
pip wheel -v -w . .
wheeldir=slycot-wheels/${{ matrix.os }}-${{ matrix.python }}-${{ matrix.bla_vendor }}
mkdir -p ${wheeldir}
cp ./slycot*.whl ${wheeldir}/
- name: Save wheel
uses: actions/upload-artifact@v2
with:
name: slycot-wheels
path: slycot-wheels
build-conda:
name: Build conda Py${{ matrix.python }}, ${{ matrix.os }}
runs-on: ${{ matrix.os }}-latest
needs: build-setup
strategy:
fail-fast: false
matrix:
os:
- 'ubuntu'
- 'macos'
- 'windows'
python:
- '3.9'
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
with:
fetch-depth: 0
submodules: 'recursive'
- name: Setup Conda
uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python }}
activate-environment: build-env
channels: conda-forge
channel-priority: strict
auto-update-conda: false
auto-activate-base: false
- name: Conda build
shell: bash -l {0}
run: |
set -e
conda install conda-build conda-verify numpy
numpyversion=$(python -c 'import numpy; print(numpy.version.version)')
conda-build --python "${{ matrix.python }}" --numpy $numpyversion conda-recipe
# preserve directory structure for custom conda channel
find "${CONDA_PREFIX}/conda-bld" -maxdepth 2 -name 'slycot*.tar.bz2' | while read -r conda_pkg; do
conda_platform=$(basename $(dirname "${conda_pkg}"))
mkdir -p "slycot-conda-pkgs/${conda_platform}"
cp "${conda_pkg}" "slycot-conda-pkgs/${conda_platform}/"
done
- name: Save to local conda pkg channel
uses: actions/upload-artifact@v2
with:
name: slycot-conda-pkgs
path: slycot-conda-pkgs
create-wheel-test-matrix:
name: Create wheel test matrix
runs-on: ubuntu-latest
needs: build-pip
if: always() # run tests for all successful builds, even if others failed
outputs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
- name: Download wheels (if any)
uses: actions/download-artifact@v2
with:
name: slycot-wheels
path: slycot-wheels
- id: set-matrix
run: |
matrix=$(python3 .github/scripts/set-pip-test-matrix.py)
echo "::set-output name=matrix::$matrix"
create-conda-test-matrix:
name: Create conda test matrix
runs-on: ubuntu-latest
needs: build-conda
if: always() # run tests for all successful builds, even if others failed
outputs:
matrix: ${{ steps.set-matrix.outputs.matrix }}
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
- name: Download conda packages
uses: actions/download-artifact@v2
with:
name: slycot-conda-pkgs
path: slycot-conda-pkgs
- id: set-matrix
run: |
matrix=$(python3 .github/scripts/set-conda-test-matrix.py)
echo "::set-output name=matrix::$matrix"
test-wheel:
name: Test wheel ${{ matrix.packagekey }}, ${{matrix.blas_lib}} BLAS lib ${{ matrix.failok }}
needs: create-wheel-test-matrix
runs-on: ${{ matrix.os }}-latest
continue-on-error: ${{ matrix.failok == 'FAILOK' }}
strategy:
fail-fast: false
matrix: ${{ fromJSON(needs.create-wheel-test-matrix.outputs.matrix) }}
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
with:
path: slycot-src
- name: Checkout python-control
uses: actions/checkout@v2
with:
repository: 'python-control/python-control'
path: python-control
- name: Setup Python
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}
- name: Setup Ubuntu
if: matrix.os == 'ubuntu'
run: |
set -xe
sudo apt-get -y update
case ${{ matrix.blas_lib }} in
Generic ) sudo apt-get -y install libblas3 liblapack3 ;;
unset | OpenBLAS ) sudo apt-get -y install libopenblas-base ;;
*)
echo "BLAS ${{ matrix.blas_lib }} not supported for wheels on Ubuntu"
exit 1 ;;
esac
update-alternatives --display libblas.so.3-x86_64-linux-gnu
update-alternatives --display liblapack.so.3-x86_64-linux-gnu
- name: Setup macOS
if: matrix.os == 'macos'
run: |
set -xe
brew install coreutils
case ${{ matrix.blas_lib }} in
unset | Generic | Apple ) ;; # system provided (Uses Apple Accelerate Framework)
OpenBLAS )
brew install openblas
echo "DYLIB_LIBRARY_PATH=/usr/local/opt/openblas/lib" >> $GITHUB_ENV
;;
*)
echo "BLAS option ${{ matrix.blas_lib }} not supported for wheels on MacOS"
exit 1 ;;
esac
- name: Download wheels
uses: actions/download-artifact@v2
with:
name: slycot-wheels
path: slycot-wheels
- name: Install Wheel
run: |
python -m pip install --upgrade pip
pip install matplotlib scipy pytest pytest-cov pytest-timeout coverage coveralls
pip install slycot-wheels/${{ matrix.packagekey }}/slycot*.whl
pip show slycot
- name: Slycot and python-control tests
run: bash slycot-src/.github/scripts/run-tests.sh
- name: report coverage
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: wheel-${{ matrix.packagekey }}-${{matrix.blas_lib}}
COVERALLS_PARALLEL: true
working-directory: slycot-src
# https://github.com/TheKevJames/coveralls-python/issues/252
run: coveralls --service=github
test-conda:
name: Test conda ${{ matrix.packagekey }}, ${{matrix.blas_lib}} BLAS lib ${{ matrix.failok }}
needs: create-conda-test-matrix
runs-on: ${{ matrix.os }}-latest
continue-on-error: ${{ matrix.failok == 'FAILOK' }}
strategy:
fail-fast: false
matrix: ${{ fromJSON(needs.create-conda-test-matrix.outputs.matrix) }}
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout Slycot
uses: actions/checkout@v2
with:
path: slycot-src
- name: Checkout python-control
uses: actions/checkout@v2
with:
repository: 'python-control/python-control'
path: python-control
- name: Setup macOS
if: matrix.os == 'macos'
run: brew install coreutils
- name: Setup Conda
uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python }}
activate-environment: test-env
environment-file: slycot-src/.github/conda-env/test-env.yml
channels: conda-forge
channel-priority: strict
auto-activate-base: false
- name: Download conda packages
uses: actions/download-artifact@v2
with:
name: slycot-conda-pkgs
path: slycot-conda-pkgs
- name: Install Conda package
run: |
set -e
case ${{ matrix.blas_lib }} in
unset ) # the conda-forge default (os dependent)
conda install libblas libcblas liblapack
;;
Generic )
conda install 'libblas=*=*netlib' 'libcblas=*=*netlib' 'liblapack=*=*netlib'
echo "libblas * *netlib" >> $CONDA_PREFIX/conda-meta/pinned
;;
OpenBLAS )
conda install 'libblas=*=*openblas' openblas
echo "libblas * *openblas" >> $CONDA_PREFIX/conda-meta/pinned
;;
Intel10_64lp )
conda install 'libblas=*=*mkl' mkl
echo "libblas * *mkl" >> $CONDA_PREFIX/conda-meta/pinned
;;
esac
conda index --no-progress ./slycot-conda-pkgs
conda install -c ./slycot-conda-pkgs slycot
conda list
- name: Slycot and python-control tests
run: bash slycot-src/.github/scripts/run-tests.sh
- name: Report coverage
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: conda-${{ matrix.packagekey }}-${{matrix.blas_lib}}
COVERALLS_PARALLEL: true
working-directory: slycot-src
# https://github.com/TheKevJames/coveralls-python/issues/252
run: coveralls --service=github
coveralls-final:
name: Finalize parallel coveralls
if: always()
needs:
- test-conda
- test-wheel
runs-on: ubuntu-latest
steps:
- name: Coveralls Finished
uses: coverallsapp/github-action@master
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
parallel-finished: true