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1. Commits on Dec 9, 2014

   • Running update_index.py

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   • Merge pull request #2 from josemduarte/master

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   • Update asa.md

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   • Update asa.md

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   • Adding asa chapter

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   • Update README.md

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   • Update crystal-contacts.md

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   • Linking to new chapters

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2. Commits on Oct 23, 2014

   • Updating Footer links

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3. Commits on Oct 21, 2014

   • fixing typo in link

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   • improving documentation according to biojava/biojava#191

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4. Commits on Oct 16, 2014

   • Update README.md

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   • Update README.md

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   • Update README.md

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   • Update README.md

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   • Update README.md

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   • Update README.md

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   • Update alignment.md

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   • Update alignment.md

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   • Update alignment.md

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   • Update alignment.md

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   • Fixing Jmol capitalization

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   • Adding Command-line tools section

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   • Added database search to structure alignment chapter

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5. Commits on Oct 10, 2014

   • Adding addition alignment algorithms & code examples

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6. Commits on Oct 8, 2014

   • Executing bin/update_index.py for the first time.

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   • Small tweeks to update_index.py

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   • Adding bin/update_index.py script.

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   • Improving descriptions of alignment algorithms

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7. Commits on Aug 28, 2014

   • Merge pull request #1 from josemduarte/master

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   • Update contact-map.md

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   • New tutorial on contact maps

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   • Update crystal-contacts.md

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   • Update crystal-contacts.md

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   • Update crystal-contacts.md

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