Issues

• o.b.n.core.sequence.CDSSequence doesn't reverse-complement correctly

  bug
  biojava/biojava#1016 · Filter by author richarda23 opened on Jan 4, 2022

• biojava-modfinder requires external resources that are no longer freely available

  bug
  biojava/biojava#975 · Filter by author josemduarte opened on Sep 30, 2021
  1

• MultipleAlignmentJmol modifies state, causing NullPointerException

  bug
  biojava/biojava#817 · Filter by author sbliven opened on Dec 31, 2018
  4

• CE-Symm assumes models come from BA

  bug
  biojava/biojava#808 · Filter by author sbliven opened on Oct 25, 2018
  4

• Symmetry detection fails for long twisted assemblies

  bug
  biojava/biojava#795 · Filter by author biocryst opened on Aug 25, 2018
  4

• CONECT/LINK line-length bug fix #2 for PDB Parser

  bug
  biojava/biojava#760 · Filter by author Sheraf-DNG opened on Mar 28, 2018
  4

• AtomCache doesn't fetch obsolete entries with mmtf

  bug
  biojava/biojava#754 · Filter by author sbliven opened on Mar 15, 2018

• StackOverflowError in Structure serialization

  bug
  biojava/biojava#697 · Filter by author lukeczapla opened on Aug 6, 2017
  14

• OBO parser: alt_id

  bugenhancement
  biojava/biojava#694 · Filter by author tulay opened on Aug 2, 2017 · 6.1.0
  3

• Error displaying MMTF structures in Jmol

  bug
  biojava/biojava#629 · Filter by author lafita opened on Jan 13, 2017
  6

• Second structure of superpositions not present in the StructureAlignmentJmol panel

  bug
  biojava/biojava#628 · Filter by author lafita opened on Jan 13, 2017
  1

• AbstractSequence not always getting correct taxonomy ID

  bug
  biojava/biojava#617 · Filter by author sanshu opened on Dec 7, 2016
  1

• NullPointerException when StructureIdentifiers are not set in MultipleAlignment

  bug
  biojava/biojava#613 · Filter by author lafita opened on Nov 29, 2016
  2

  

• NumberFormatException for Structures with Insertion Codes

  bug
  biojava/biojava#515 · Filter by author lafita opened on Jun 16, 2016
  3

  

• Getting ResidueIdentifier without aligned SEQRES

  bugminor
  biojava/biojava#456 · Filter by author sbliven opened on Apr 21, 2016 · 6.1.0
  4

  

• command line execution of protein comparison tools is broken for -file arguments

  bug
  biojava/biojava#443 · Filter by author andreasprlic opened on Mar 24, 2016
  1

  

• More robust SDF generation

  bugdocumentationenhancement
  biojava/biojava#435 · Filter by author abradle opened on Mar 15, 2016
  

• Alignments do not allow consecutive gaps

  bug
  biojava/biojava#213 · Filter by author sbliven opened on Dec 2, 2014
  9