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biojava
biojava
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Commits on Sep 19, 2026
Updating readme after release
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Updating readme after release
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[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.3.0
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Merge pull request #1155 from josemduarte/jd/interf-clustering
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Sort by number of contacts for a more deterministic clustering result.
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Sort by number of contacts for a more deterministic clustering result.
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Fixed ignored tests javadocs
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Guard against empty clusters
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Commits on Sep 17, 2026
Merge pull request #1156 from josemduarte/jd/fixcaonly-cif
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Merge branch 'master' into jd/fixcaonly-cif
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Fixing test to be compatible with all platforms and checkout styles
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Further fix: don't add empty groups or chains in parseCAOnly
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Commits on Sep 14, 2026
Updating changelog
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Updating changelog
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Bugfix: setParseCAOnly wasn't correctly filtering CA-only in CIF implementation
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Docs
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New ignored test to show difference of leader algo vs previous single linkage
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Use a greedy approach (leader algorithm) for a much more scalable interface clustering
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Merge pull request #1151 from aalhossary/aa/follow-redirects
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Merge pull request #1154 from aalhossary/aa/absent-file-status
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Commits on Sep 6, 2026
Do not pin the status an absent file returns
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Commits on Sep 4, 2026
Merge pull request #1142 from aalhossary/aa/bump-7.3.0-snapshot
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Merge pull request #1134 from aalhossary/aa/electron-density-maps
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Merge pull request #1147 from biojava/jd/contact-perf
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Commits on Sep 3, 2026
Docs
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Commits on Sep 1, 2026
Merge pull request #1150 from aalhossary/aa/ecod-lock-on-failure
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Merge pull request #1148 from josemduarte/jd/asa-perf
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Commits on Aug 30, 2026
Assert the coefficient checksum only when the server offers one
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Address map coefficients by name, not by a constructed path
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Convert the density tests to JUnit 5
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Use a definition list rather than a table in UrlTemplates javadoc
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Test the density fetching, offline and against the live services
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Add a Show Electron Density menu item, listener and demo
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Display density maps in the Jmol panel
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