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1. Commits on Apr 27, 2020

   • static is better, wastes less memory

     paolopavan

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   • unused

     paolopavan

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   • never thrown exception

     paolopavan

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   • maybe better to delete, can be recreated eventually needed

     paolopavan

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   • better management of not implemented methods

     paolopavan

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   • this can be final

     paolopavan

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   • increased type checking

     paolopavan

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   • this is not suppressing anything

     paolopavan

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   • raw type checking fixes

     paolopavan

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   • deleted un needed methods

     paolopavan

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   • assertion normalization

     paolopavan

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   • deleted unneeded Exception

     paolopavan

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   • Usually expected preceeds tested

     paolopavan

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2. Commits on Apr 26, 2020

   • fixed failing unit test

     paolopavan

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   • Fixed failing unit test for sequence lengths not compatible with integer. This fix should be propagated to Location class and related.

     paolopavan

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   • Improved unit test

     paolopavan

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   • even better location management

     paolopavan

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3. Commits on Apr 25, 2020

   • Modified the exception to take in account this particular case

     paolopavan

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   • Implementation of exceptional complex location in case of location spanning the end point. Location contract wants sublocations

     paolopavan

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   • Need to propagate down also this bit of information. Since two parameters more may be less readable I changed strategy and configured parser class.

     paolopavan

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   • Need to extract also the sequence length to correctly create two locations spanning sequence end.

     paolopavan

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   • Propagate down this bit of information

     paolopavan

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   • retrieve information of circular sequence

     paolopavan

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   • Added basic integration test to demonstrate the issue

     paolopavan

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   • Added sequence file mentioned in #855

     paolopavan

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4. Commits on Sep 6, 2019

   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.3.0

     josemduarte

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5. Commits on Jun 23, 2019

   • Merge branch 'master' into uniprot-sequence-space-fix

     emckee2006

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6. Commits on Jun 8, 2019

   • Update UniprotProxySequenceReader.java

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     emckee2006

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7. Commits on Jun 7, 2019

   • Update UniprotProxySequenceReader.java

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     emckee2006

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8. Commits on Jun 6, 2019

   • Update UniprotProxySequenceReader.java

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     emckee2006

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9. Commits on Jun 5, 2019

   • Update UniprotProxySequenceReader.java

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     emckee2006

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10. Commits on May 2, 2019

    • Fixing #837

      josemduarte

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    • Hoping to fix LF/CRLF problems causing 4 files to be shown as modified by git

      josemduarte

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11. Commits on Apr 24, 2019

    • Merge pull request #835 from jamesmorris/issue833

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      josemduarte

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