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biojava
biojava
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biojava
biojava-structure
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biojava-7.3.0
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Commits on Aug 26, 2026
Bump com.fasterxml.jackson.core:jackson-databind in /biojava-structure
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Merge branch 'master' into jd/cath-fixes
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Merge upstream master into aa/ecod-new-format
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Fix ArrayIndexOutOfBoundsException and file validation in CathInstallation
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Use parallel primitive arrays for neighbors in AsaCalculator
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Commits on Aug 24, 2026
Pure array solution for sphere points. About 10% faster
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Commits on Aug 17, 2026
Test every ECOD layout offline
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Support the new ECOD distribution format
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Commits on Aug 16, 2026
Test that a redirect or error is never cached as a chem comp definition
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Commits on Aug 15, 2026
Reject redirects and error responses in the chem comp download
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Fix CATH downloads: use https, and check the response before caching it
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Make LocalPDBDirectory.getLastModifiedTime public
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Fix FileDownloadUtils validation and implement checksum verification
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Commits on Jul 30, 2026
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.2.6
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Commits on Jul 29, 2026
Bugfix: parsing of mmCIF files with empty database_PDB_rev.date
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Commits on May 5, 2026
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.2.5
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Adding safeguard, bug introduced in #1116 and reported in Biojava-l
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Commits on Dec 14, 2025
Refactor: fix SonarQube S1155 issues (#1079)
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Commits on Dec 10, 2025
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.2.4
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Merge pull request #1120 from biojava/sym-edgecase
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Commits on Dec 8, 2025
Merge pull request #1119 from Pasjonat90D/fix/use-isempty-instead-of-size-#1079
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Bugfix: edge-case with no equiv residues in alignment wasn't dealt with and led to IllegalArgumentException.
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Commits on Nov 30, 2025
Fix #1079: Use isEmpty() instead of size() == 0
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Commits on Nov 21, 2025
Fix RSPEC-1940 boolean checks
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Commits on Nov 13, 2025
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.2.3
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Commits on Nov 8, 2025
Fix for #1116
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Commits on Mar 20, 2025
[maven-release-plugin] prepare for next development iteration
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[maven-release-plugin] prepare release biojava-7.2.2
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Commits on Mar 19, 2025
Safeguards
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More cleanup
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More cleanup
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