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Copy pathPDBStatusTest.java
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74 lines (68 loc) · 2.27 KB
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/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.nbio.structure;
import nz.ac.wgtn.saflate.network.junit4.SanitiseNetworkDependenciesRule;
import org.biojava.nbio.structure.PDBStatus.Status;
import org.junit.Assert;
import org.junit.Rule;
import org.junit.Test;
import java.io.IOException;
/**
* @author Spencer Bliven <sbliven@ucsd.edu>
*
*/
public class PDBStatusTest {
@Rule
public SanitiseNetworkDependenciesRule rule = new SanitiseNetworkDependenciesRule();
/**
* Test {@link PDBStatus#getStatus(String)}.
*
* <p>Uses the following PDBs:<br/>
* <pre>1HHB OBSOLETE replacedBy=4HHB
*4HHB CURRENT replaces=1HHB
*3HHB CURRENT replaces=1HHB
*</pre>
*/
@Test
public void testGetStatus() throws IOException {
Assert.assertEquals(Status.REMOVED, PDBStatus.getStatus("1HHB"));
Assert.assertEquals(Status.CURRENT, PDBStatus.getStatus("3HHB"));
Assert.assertEquals(Status.CURRENT, PDBStatus.getStatus("4HHB"));
}
@Test
public void testGetStatusMultipleIds() throws IOException {
String[] ids = {"1HHB", "3HHB", "4HHB"};
Status[] statuses = PDBStatus.getStatus(ids);
Assert.assertEquals(Status.REMOVED, statuses[0]);
Assert.assertEquals(Status.CURRENT, statuses[1]);
Assert.assertEquals(Status.CURRENT, statuses[2]);
}
@Test
public void testGetCurrent() throws IOException {
Assert.assertEquals("4HHB", PDBStatus.getCurrent("1HHB"));
Assert.assertEquals("3HHB", PDBStatus.getCurrent("3HHB"));
Assert.assertNull(PDBStatus.getCurrent("1CMW"));
Assert.assertEquals("3ENI", PDBStatus.getCurrent("1KSA"));
Assert.assertEquals("8CAT", PDBStatus.getCurrent("1CAT"));
Assert.assertEquals("8CAT", PDBStatus.getCurrent("3CAT"));
Assert.assertEquals("7CAT", PDBStatus.getCurrent("7CAT"));
}
}