codex_preprocessing/run.job at main · ajortizg/codex_preprocessing

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#!/bin/bash

#SBATCH --partition=gn

#SBATCH --gres=gpu:1

#SBATCH --job-name="prep_ipt"

#SBATCH --output=./outputs/logs/BAT_WT.log

#SBATCH --nodes=1

#SBATCH --ntasks=1

#SBATCH --cpus-per-task=16

#SBATCH --mem=100G

#SBATCH --nodelist=gn03

python main.py +experiment=prep_BAT_WT

# ~pipeline.deconvolution \

# ~pipeline.edof \

# ~pipeline.illumination_correction \

# ~pipeline.stitching \

# ~pipeline.background_correction

# ~pipeline.tma_dearray