Index

A

add_boo() (portpy.photon.cvxpy_prob.CvxPyProb method) add_constraints() (portpy.photon.cvxpy_prob.CvxPyProb method) add_criterion() (portpy.photon.clinical_criteria.ClinicalCriteria method) add_dvh() (portpy.photon.cvxpy_prob.CvxPyProb method) add_max() (portpy.photon.cvxpy_prob.CvxPyProb method) add_mean() (portpy.photon.cvxpy_prob.CvxPyProb method)

add_objective() (portpy.photon.cvxpy_prob.CvxPyProb method) add_overdose_quad() (portpy.photon.cvxpy_prob.CvxPyProb method) add_quad() (portpy.photon.cvxpy_prob.CvxPyProb method) add_rinds() (portpy.photon.plan.Plan method) add_smoothness_quad() (portpy.photon.cvxpy_prob.CvxPyProb method) add_underdose_quad() (portpy.photon.cvxpy_prob.CvxPyProb method)

B

Beams (class in portpy.photon.beam)

C

ClinicalCriteria (class in portpy.photon.clinical_criteria) create_beamlet_idx_2d_grid() (portpy.photon.beam.Beams method) (portpy.photon.influence_matrix.InfluenceMatrix method) create_BEV_mask_from_contours() (portpy.photon.influence_matrix.InfluenceMatrix method)

create_criterion() (portpy.photon.clinical_criteria.ClinicalCriteria static method) create_inf_matrix() (portpy.photon.plan.Plan method) create_rinds() (portpy.photon.optimization.Optimization static method) create_structure() (portpy.photon.structures.Structures method) CvxPyProb (class in portpy.photon.cvxpy_prob)

D

delete_structure() (portpy.photon.structures.Structures method) display_patient_metadata() (portpy.photon.visualization.Visualization static method) display_patients() (portpy.photon.visualization.Visualization static method) dose_1d_to_3d() (portpy.photon.influence_matrix.InfluenceMatrix method)

dose_3d_to_1d() (portpy.photon.influence_matrix.InfluenceMatrix method) dose_type (portpy.photon.visualization.Visualization attribute) down_sample_2d_grid() (portpy.photon.influence_matrix.InfluenceMatrix method) down_sample_voxels() (portpy.photon.influence_matrix.InfluenceMatrix method)

E

Evaluation (class in portpy.photon.evaluation)

expand() (portpy.photon.structures.Structures method)

F

fluence_1d_to_2d() (portpy.photon.influence_matrix.InfluenceMatrix method)

fluence_2d_to_1d() (portpy.photon.influence_matrix.InfluenceMatrix method)

G

get_all_beam_ids() (portpy.photon.beam.Beams method) (portpy.photon.influence_matrix.InfluenceMatrix method) get_beamlet_height() (portpy.photon.beam.Beams method) get_beamlet_idx_2dgrid() (portpy.photon.beam.Beams method) get_beamlet_info() (portpy.photon.influence_matrix.InfluenceMatrix method) get_beamlet_width() (portpy.photon.beam.Beams method) get_bev_2d_grid() (portpy.photon.influence_matrix.InfluenceMatrix method) get_cmap_colors() (portpy.photon.visualization.Visualization static method) get_collimator_angle() (portpy.photon.beam.Beams method) get_colors() (portpy.photon.visualization.Visualization static method) get_criteria() (portpy.photon.clinical_criteria.ClinicalCriteria method) get_ct_res_xyz_mm() (portpy.photon.plan.Plan method) get_disease_site() (portpy.photon.plan.Plan method) get_dose() (portpy.photon.evaluation.Evaluation static method) get_dvh() (portpy.photon.evaluation.Evaluation static method) get_fraction_of_vol_in_calc_box() (portpy.photon.structures.Structures method) get_gantry_angle() (portpy.photon.beam.Beams method)

get_influence_matrix() (portpy.photon.influence_matrix.InfluenceMatrix method) get_max_dose() (portpy.photon.evaluation.Evaluation static method) get_mean_dose() (portpy.photon.evaluation.Evaluation static method) get_num_of_fractions() (portpy.photon.plan.Plan method) get_opt_voxels_idx() (portpy.photon.influence_matrix.InfluenceMatrix method) get_opt_voxels_size() (portpy.photon.influence_matrix.InfluenceMatrix method) get_orig_res_2d_grid() (portpy.photon.influence_matrix.InfluenceMatrix method) get_original_map() (portpy.photon.beam.Beams static method) get_plan_beams() (portpy.photon.plan.Plan static method) get_prescription() (portpy.photon.plan.Plan method) get_smoothness_matrix() (portpy.photon.cvxpy_prob.CvxPyProb static method) (portpy.photon.optimization.Optimization static method) get_sol() (portpy.photon.cvxpy_prob.CvxPyProb method) get_structures() (portpy.photon.structures.Structures method) get_volume() (portpy.photon.evaluation.Evaluation static method) get_volume_cc() (portpy.photon.structures.Structures method) get_voxel_info() (portpy.photon.influence_matrix.InfluenceMatrix method)

I

InfluenceMatrix (class in portpy.photon.influence_matrix)

intersect() (portpy.photon.structures.Structures method) is_notebook() (portpy.photon.visualization.Visualization static method)

L

legend_dose_storage() (portpy.photon.visualization.Visualization static method) list_to_dict() (in module portpy.photon.utils.load_metadata) load_config_clinical_criteria() (in module portpy.photon.utils.load_metadata) load_config_planner_metadata() (in module portpy.photon.utils.load_metadata) load_data() (in module portpy.photon.utils.load_data) load_file() (in module portpy.photon.utils.load_data)

load_inf_matrix() (in module portpy.photon.utils.save_or_load_pickle) load_metadata() (in module portpy.photon.utils.load_metadata) load_optimal_sol() (in module portpy.photon.utils.save_or_load_pickle) (portpy.photon.plan.Plan static method) load_plan() (in module portpy.photon.utils.save_or_load_pickle) (portpy.photon.plan.Plan static method)

M

matching_keys() (portpy.photon.cvxpy_prob.CvxPyProb static method) (portpy.photon.optimization.Optimization static method) modify_criterion() (portpy.photon.clinical_criteria.ClinicalCriteria method) modify_structure() (portpy.photon.structures.Structures method) module portpy portpy.photon portpy.photon.beam portpy.photon.clinical_criteria portpy.photon.cvxpy_prob portpy.photon.evaluation portpy.photon.influence_matrix portpy.photon.optimization portpy.photon.plan portpy.photon.structures portpy.photon.utils portpy.photon.utils.load_data portpy.photon.utils.load_metadata portpy.photon.utils.save_nrrd portpy.photon.utils.save_or_load_pickle portpy.photon.utils.sol_change_inf_matrix portpy.photon.utils.view_in_slicer_jupyter portpy.photon.visualization

O

Optimization (class in portpy.photon.optimization)

P

Plan (class in portpy.photon.plan) plan_metrics() (portpy.photon.visualization.Visualization static method) plot_2d_dose() (portpy.photon.visualization.Visualization static method) plot_binary_mask_points() (portpy.photon.visualization.Visualization static method) plot_dvh() (portpy.photon.plan.Plan method) (portpy.photon.visualization.Visualization static method) plot_fluence_2d() (portpy.photon.influence_matrix.InfluenceMatrix method) (portpy.photon.plan.Plan static method) (portpy.photon.visualization.Visualization static method) plot_fluence_3d() (portpy.photon.influence_matrix.InfluenceMatrix method) (portpy.photon.plan.Plan static method) (portpy.photon.visualization.Visualization static method) plot_robust_dvh() (portpy.photon.visualization.Visualization static method) portpy module portpy.photon module portpy.photon.beam module portpy.photon.clinical_criteria module portpy.photon.cvxpy_prob module portpy.photon.evaluation module portpy.photon.influence_matrix module

portpy.photon.optimization module portpy.photon.plan module portpy.photon.structures module portpy.photon.utils module portpy.photon.utils.load_data module portpy.photon.utils.load_metadata module portpy.photon.utils.save_nrrd module portpy.photon.utils.save_or_load_pickle module portpy.photon.utils.sol_change_inf_matrix module portpy.photon.utils.view_in_slicer_jupyter module portpy.photon.visualization module pre_process_voxels() (portpy.photon.influence_matrix.InfluenceMatrix method) preprocess_beams() (portpy.photon.beam.Beams method) (portpy.photon.influence_matrix.InfluenceMatrix method) preprocess_structures() (portpy.photon.structures.Structures method)

R

run_IMRT_fluence_map_CVXPy() (portpy.photon.optimization.Optimization static method) (portpy.photon.plan.Plan method)

run_IMRT_fluence_map_CVXPy_BOO_benchmark() (portpy.photon.optimization.Optimization static method) run_IMRT_fluence_map_CVXPy_dvh_benchmark() (portpy.photon.optimization.Optimization static method)

S

save_inf_matrix() (in module portpy.photon.utils.save_or_load_pickle) save_nrrd() (in module portpy.photon.utils.save_nrrd) (portpy.photon.plan.Plan method) save_optimal_sol() (in module portpy.photon.utils.save_or_load_pickle) (portpy.photon.plan.Plan static method) save_plan() (in module portpy.photon.utils.save_or_load_pickle) (portpy.photon.plan.Plan method) set_opt_voxel_idx() (portpy.photon.influence_matrix.InfluenceMatrix method) set_rinds_opt_voxel_idx() (portpy.photon.optimization.Optimization static method)

shrink() (portpy.photon.structures.Structures method) sol_change_inf_matrix() (in module portpy.photon.utils.sol_change_inf_matrix) solve() (portpy.photon.cvxpy_prob.CvxPyProb method) sort_beamlets() (portpy.photon.beam.Beams static method) (portpy.photon.influence_matrix.InfluenceMatrix static method) Structures (class in portpy.photon.structures) subtract() (portpy.photon.structures.Structures method) surface_plot() (portpy.photon.influence_matrix.InfluenceMatrix static method) (portpy.photon.visualization.Visualization static method)

U

union() (portpy.photon.structures.Structures method)

V

view_in_slicer() (portpy.photon.plan.Plan method) (portpy.photon.visualization.Visualization static method) view_in_slicer_jupyter() (in module portpy.photon.utils.view_in_slicer_jupyter) (portpy.photon.visualization.Visualization static method)

Visualization (class in portpy.photon.visualization) volume_type (portpy.photon.visualization.Visualization attribute)