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AndrewLutskyAndrewLutsky
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Tried regenerating schema to properly show pmids
1 parent 0e1d9fc commit b85173a

2 files changed

Lines changed: 228 additions & 18 deletions

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‎demo_network/schema.json‎

Lines changed: 18 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@
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{
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"node": "authors",
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"example": [
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"A Ma'ayan",
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"DJB Clarke"
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"JJ Bieker",
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"TA Blenkinsop"
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],
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"display": [
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{
@@ -26,18 +26,18 @@
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"relation": [],
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"search": [
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"id",
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"label",
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"PMIDS"
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"label"
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]
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},
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{
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"node": "pmid",
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"node": "pmids",
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"example": [
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"37214901"
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38812546,
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36884236
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],
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"display": [
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{
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"label": "pmid ID",
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"label": "pmids ID",
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"text": "${id}",
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"type": "text"
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},
@@ -49,21 +49,21 @@
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{
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"label": "url",
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"text": "${url}",
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"type": "url"
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"href": "${url}",
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"type": "link"
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}
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],
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"relation": [],
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"search": [
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"id",
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"label",
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"url"
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]
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"label"
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]
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}
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],
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"edges": [
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{
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"match": [
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"Coauthors"
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"published"
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],
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"selected": true,
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"display": [
@@ -81,17 +81,12 @@
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"label": "target",
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"text": "${target}",
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"type": "text"
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},
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{
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"label": "Citations",
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"text": "${Citations}",
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"type": "text"
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}
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]
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},
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{
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"match": [
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"published"
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"Coauthors"
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],
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"selected": true,
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"display": [
@@ -109,6 +104,11 @@
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"label": "target",
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"text": "${target}",
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"type": "text"
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},
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{
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"label": "Citations",
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"text": "${Citations}",
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"type": "text"
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}
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]
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}

‎demo_network/schema.json.BAK‎

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Original file line numberDiff line numberDiff line change
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{
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"nodes": [
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{
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"node": "authors",
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"example": [
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"A Ma'ayan",
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"DJB Clarke"
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],
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"display": [
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{
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"label": "authors ID",
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"text": "${id}",
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"type": "text"
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},
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{
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"label": "label",
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"text": "${label}",
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"type": "text"
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},
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{
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"label": "PMIDS",
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"text": "${PMIDS}",
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"type": "text"
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}
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],
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"relation": [],
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"search": [
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"id",
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"label",
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"PMIDS"
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]
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},
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{
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"node": "pmid",
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"example": [
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"37214901"
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],
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"display": [
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{
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"label": "pmid ID",
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"text": "${id}",
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"type": "text"
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},
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{
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"label": "label",
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"text": "${label}",
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"type": "text"
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},
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{
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"label": "url",
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"text": "${url}",
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"type": "url"
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}
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],
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"relation": [],
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"search": [
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"id",
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"label",
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"url"
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]
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}
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],
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"edges": [
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{
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"match": [
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"Coauthors"
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],
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"selected": true,
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"display": [
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{
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"label": "source",
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"text": "${source}",
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"type": "text"
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},
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{
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"label": "relation",
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"text": "${relation}",
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"type": "text"
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},
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{
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"label": "target",
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"text": "${target}",
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"type": "text"
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},
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{
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"label": "Citations",
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"text": "${Citations}",
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"type": "text"
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}
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]
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},
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{
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"match": [
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"published"
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],
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"selected": true,
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"display": [
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{
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"label": "source",
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"text": "${source}",
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"type": "text"
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},
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{
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"label": "relation",
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"text": "${relation}",
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"type": "text"
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},
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{
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"label": "target",
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"text": "${target}",
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"type": "text"
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}
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]
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}
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],
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"header": {
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"header": "Demo-KG",
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"title": "Demo-KG",
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"background": {
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"backgroundColor": "#000",
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"contrastText": "#FFF"
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},
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"icon": {
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"src": "https://minio.dev.maayanlab.cloud/enrichr-kg/enrichr-kg.png",
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"favicon": "https://minio.dev.maayanlab.cloud/enrichr-kg/enrichr-kg.png",
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"faviconTitle": "Demo-KG",
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"alt": "Demo-KG",
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"key": "Demo-KG_logo",
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"width": 100,
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"height": 60
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},
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"tabs": [
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{
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"endpoint": "/",
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"label": "Term & Gene Search",
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"type": "page",
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"component": "KnowledgeGraph",
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"props": {
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"init_function": "initialize_kg",
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"initial_query": {
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"start": "authors",
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"start_term": "A Ma'ayan",
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"start_field": "label"
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},
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"subheader": {
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"url_field": "filter",
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"query_field": "relation"
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}
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}
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}
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]
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},
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"footer": {
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"style": {
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"background": "#000",
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"color": "#FFF"
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},
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"layout": [
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[
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{
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"component": "logo",
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"props": {
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"src": "https://minio.dev.maayanlab.cloud/enrichr-kg/enrichr-kg.png",
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"alt": "enrichr-kg",
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"title": "Enrichr-KG",
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"color": "inherit",
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"size": "small"
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}
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},
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{
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"component": "github",
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"props": {
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"code": "https://github.com/MaayanLab/enrichr-kg",
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"issues": "https://github.com/MaayanLab/enrichr-kg-issues/issues/new"
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}
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}
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],
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[
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{
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"component": "icon",
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"props": {
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"type": "icon",
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"key": "lab_icon",
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"src": "https://minio.dev.maayanlab.cloud/enrichr-kg/maayanlab.png",
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"alt": "MaayanLab",
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"href": "https://labs.icahn.mssm.edu/maayanlab/",
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"height": 60,
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"width": 150
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}
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}
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],
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[
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{
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"component": "icon",
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"props": {
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"type": "icon",
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"key": "center_icon",
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"src": "https://minio.dev.maayanlab.cloud/enrichr-kg/bioinformatics.png",
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"alt": "COB",
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"href": "https://icahn.mssm.edu/research/bioinformatics",
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"height": 60,
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"width": 150
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}
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}
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]
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],
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"footer_text": "<span style='color:white'>Please acknowledge Enrichr-KG in your publications by citing the following reference:<br><a style='color: cyan' href='https://doi.org/10.1093/nar/gkad393'>Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic Acids Res. 2023 May 11:gkad393. doi: 10.1093/nar/gkad393. PMID: 37166973.</a></span>"
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},
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"ui_theme": "enrichr_kg_theme"
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}

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