Issues

Test RunResults using a model with a dFBA submodel, and check on dfba_reaction_fluxes
KarrLab/wc_sim#115 · opened on Dec 26, 2020
refactor rate law and enabled reaction calculations in DynamicSubmodel so eval_dynamic_rate_laws can use them
KarrLab/wc_sim#114 · opened on Dec 26, 2020
Remove use of typing module in message_types.py when earliest supported Python version >= 3.9
KarrLab/wc_sim#112 · opened on Oct 28, 2020
Handle ambient species, which are used in reactions but have "infinite" supply
KarrLab/wc_sim#111 · opened on Sep 24, 2020
Support simulation of large models in modest amounts of RAM
KarrLab/wc_sim#110 · opened on Sep 21, 2020
WC Sim container for BioSimulators
KarrLab/wc_sim#109 · opened on Sep 18, 2020
Report invalid positive reaction rates in ODE submodels
KarrLab/wc_sim#108 · opened on Sep 11, 2020
Dynamically reduce the time steps of dFBA submodels
KarrLab/wc_sim#107 · opened on Sep 11, 2020
Improve performance of WC expression evaluation
KarrLab/wc_sim#102 · opened on Sep 2, 2020
Optimization for reaction network dependency analysis
KarrLab/wc_sim#101 · opened on Jul 16, 2020
Investigate possible problem with SsaTestCase 00003
KarrLab/wc_sim#100 · opened on Jul 3, 2020
Properly handle RandomStates
KarrLab/wc_sim#99 · opened on Jul 1, 2020
RunResults visualization
KarrLab/wc_sim#98 · opened on Jul 1, 2020
Make NRM a simulation method in the onto, instead of a framework
KarrLab/wc_sim#97 · opened on Jun 17, 2020
1
Run-time error checking of caching
KarrLab/wc_sim#95 · opened on May 22, 2020
To improve performance suspend default run-time error checking more broadly
KarrLab/wc_sim#94 · opened on May 19, 2020
Add logging in propensity calculations and a method that takes a model and evaluates its performance at time 0
KarrLab/wc_sim#93 · opened on May 11, 2020
1
Add options to 'wc-sim sim' CLI interface
KarrLab/wc_sim#92 · opened on May 8, 2020
test SSA & NRM with many more runs
KarrLab/wc_sim#91 · opened on May 4, 2020
Generalize validation with SBML test suite
KarrLab/wc_sim#90 · opened on Apr 17, 2020
Decide what to do about propensities < 0
KarrLab/wc_sim#89 · opened on Apr 17, 2020 · Q2 2020
compare performance of SSA and NRM
KarrLab/wc_sim#87 · opened on Apr 15, 2020
Improve NRM submodel
KarrLab/wc_sim#86 · opened on Apr 15, 2020
1
Clean up wc_sim/message_types.py
KarrLab/wc_sim#84 · opened on Apr 11, 2020
Enhance RunResults
KarrLab/wc_sim#83 · opened on Apr 9, 2020