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# -*- coding: utf-8 -*-
# *****************************************************************************
# Copyright (c) 2017-2020, Intel Corporation All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# Redistributions of source code must retain the above copyright notice,
# this list of conditions and the following disclaimer.
#
# Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
# PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
# CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
# EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# *****************************************************************************
from setuptools import setup, Extension, find_packages, Command
import platform
import os
import sys
import numba
from docs.source.buildscripts.sdc_build_doc import SDCBuildDoc
# Note we don't import Numpy at the toplevel, since setup.py
# should be able to run without Numpy for pip to discover the
# build dependencies
import numpy.distutils.misc_util as np_misc
import versioneer
# String constants for Intel SDC project configuration
# This name is used for wheel package build
SDC_NAME_STR = 'sdc'
# Inject required options for extensions compiled against the Numpy
# C API (include dirs, library dirs etc.)
np_compile_args = np_misc.get_info('npymath')
is_win = platform.system() == 'Windows'
is_osx = platform.system() == 'Darwin'
def readme():
with open('README.rst', encoding='utf-8') as f:
return f.read()
# package environment variable is PREFIX during build time
if 'CONDA_BUILD' in os.environ:
PREFIX_DIR = os.environ['PREFIX']
else:
PREFIX_DIR = os.environ['CONDA_PREFIX']
# C libraries are in \Library on Windows
if is_win:
PREFIX_DIR += r'\Library'
try:
import pyarrow
except ImportError:
_has_pyarrow = False
else:
_has_pyarrow = True
# Copypaste from numba
def check_file_at_path(path2file):
"""
Takes a list as a path, a single glob (*) is permitted as an entry which
indicates that expansion at this location is required (i.e. version
might not be known).
"""
found = None
path2check = [os.path.split(os.path.split(sys.executable)[0])[0]]
path2check += [os.getenv(n, '') for n in ['CONDA_PREFIX', 'PREFIX']]
if sys.platform.startswith('win'):
path2check += [os.path.join(p, 'Library') for p in path2check]
for p in path2check:
if p:
if '*' in path2file:
globloc = path2file.index('*')
searchroot = os.path.join(*path2file[:globloc])
try:
potential_locs = os.listdir(os.path.join(p, searchroot))
except BaseException:
continue
searchfor = path2file[globloc + 1:]
for x in potential_locs:
potpath = os.path.join(p, searchroot, x, *searchfor)
if os.path.isfile(potpath):
found = p # the latest is used
elif os.path.isfile(os.path.join(p, *path2file)):
found = p # the latest is used
return found
# Search for Intel TBB, first check env var TBBROOT then conda locations
tbb_root = os.getenv('TBBROOT')
if not tbb_root:
tbb_root = check_file_at_path(['include', 'tbb', 'tbb.h'])
assert tbb_root, "TBB headers required to build SDC not found"
ind = [PREFIX_DIR + '/include', ]
lid = [PREFIX_DIR + '/lib', ]
if is_win:
eca = ['/std:c++17', "/Ox", "/DTBB_PREVIEW_WAITING_FOR_WORKERS=1", ] # "/Zi", "/Od", "/DEBUG:FULL"]
ela = [] # '/DEBUG:FULL', ]
else:
eca = ['-std=c++17', "-O3", "-DTBB_PREVIEW_WAITING_FOR_WORKERS=1", ] # '-g', '-O0']
ela = []
# On macOS, c++17 flag is ignored unless this flag is also passed to distutils
if is_osx:
eca += ["-fno-aligned-allocation"]
io_libs = []
ext_io = Extension(name="sdc.hio",
sources=["sdc/io/_io.cpp"],
depends=["sdc/_hpat_common.h", "sdc/_distributed.h",
"sdc/_import_py.h",
"sdc/_datetime_ext.h"],
include_dirs=ind + np_compile_args['include_dirs'],
library_dirs=lid,
extra_compile_args=eca,
extra_link_args=ela,
language="c++"
)
ext_transport_seq = Extension(name="sdc.transport_seq",
sources=["sdc/transport/hpat_transport_single_process.cpp"],
depends=["sdc/_distributed.h"],
include_dirs=ind,
library_dirs=lid,
extra_compile_args=eca,
extra_link_args=ela,
language="c++"
)
ext_hdist = Extension(name="sdc.hdist",
sources=["sdc/_distributed.cpp"],
depends=["sdc/_hpat_common.h"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_chiframes = Extension(name="sdc.chiframes",
sources=["sdc/_hiframes.cpp"],
depends=["sdc/_hpat_sort.h"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_set = Extension(name="sdc.hset_ext",
sources=["sdc/_set_ext.cpp"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_sort = Extension(name="sdc.concurrent_sort",
sources=[
"sdc/native/sort.cpp",
"sdc/native/stable_sort.cpp",
"sdc/native/module.cpp",
"sdc/native/utils.cpp"],
extra_compile_args=eca,
extra_link_args=ela,
libraries=['tbb'],
include_dirs=ind + ["sdc/native/", os.path.join(tbb_root, 'include')],
library_dirs=lid + [
# for Linux
os.path.join(tbb_root, 'lib', 'intel64', 'gcc4.4'),
# for MacOS
os.path.join(tbb_root, 'lib'),
# for Windows
os.path.join(tbb_root, 'lib', 'intel64', 'vc_mt'),
],
language="c++"
)
str_libs = np_compile_args['libraries']
numba_include_path = numba.extending.include_path()
ext_str = Extension(name="sdc.hstr_ext",
sources=["sdc/_str_ext.cpp"],
libraries=str_libs,
define_macros=np_compile_args['define_macros'],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=np_compile_args['include_dirs'] + ind + [numba_include_path],
library_dirs=np_compile_args['library_dirs'] + lid,
)
ext_dt = Extension(name="sdc.hdatetime_ext",
sources=["sdc/_datetime_ext.cpp"],
libraries=np_compile_args['libraries'],
define_macros=np_compile_args['define_macros'],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=np_compile_args['include_dirs'],
library_dirs=np_compile_args['library_dirs'],
language="c++"
)
pq_libs = ['arrow', 'parquet']
ext_parquet = Extension(name="sdc.parquet_cpp",
sources=["sdc/io/_parquet.cpp"],
libraries=pq_libs,
include_dirs=['.'] + ind,
define_macros=[('BUILTIN_PARQUET_READER', None)],
extra_compile_args=eca,
extra_link_args=ela,
library_dirs=lid,
)
ext_conc_dict = Extension(name="sdc.hconc_dict",
sources=[
"sdc/native/conc_dict_module.cpp",
"sdc/native/utils.cpp"],
extra_compile_args=eca,
extra_link_args=ela,
libraries=['tbb'],
include_dirs=[
"sdc/native/",
numba_include_path,
os.path.join(tbb_root, 'include')],
library_dirs=lid + [
# for Linux
os.path.join(tbb_root, 'lib', 'intel64', 'gcc4.4'),
# for MacOS
os.path.join(tbb_root, 'lib'),
# for Windows
os.path.join(tbb_root, 'lib', 'intel64', 'vc_mt'),
],
language="c++"
)
_ext_mods = [ext_hdist, ext_chiframes, ext_set, ext_str, ext_dt, ext_io, ext_transport_seq, ext_sort,
ext_conc_dict]
# Support of Parquet is disabled because HPAT pipeline does not work now
# if _has_pyarrow:
# _ext_mods.append(ext_parquet)
class style(Command):
""" Command to check and adjust code style
Usage:
To check style: python ./setup.py style
To fix style: python ./setup.py style -a
"""
user_options = [
('apply', 'a', 'Apply codestyle changes to sources.')
]
description = "Code style check and apply (with -a)"
boolean_options = []
_result_marker = "Result:"
_project_directory_excluded = ['build', '.git']
_c_formatter = 'clang-format-6.0'
_c_formatter_install_msg = 'pip install clang'
_c_formatter_command_line = [_c_formatter, '-style=file']
_c_file_extensions = ['.h', '.c', '.hpp', '.cpp']
_py_checker = 'pycodestyle'
_py_formatter = 'autopep8'
_py_formatter_install_msg = 'pip install --upgrade autopep8\npip install --upgrade pycodestyle'
# E265 and W503 excluded because I didn't find a way to apply changes automatically
_py_checker_command_line = [_py_checker, '--ignore=E265,W503']
_py_formatter_command_line = [_py_formatter, '--in-place', '--aggressive', '--aggressive']
_py_file_extensions = ['.py']
def _get_file_list(self, path, search_extentions):
""" Return file list to be adjusted or checked
path - is the project base path
search_extentions - list of strings with files extension to search recurcivly
"""
files = []
exluded_directories_full_path = [os.path.join(path, excluded_dir)
for excluded_dir in self._project_directory_excluded]
# r=root, d=directories, f = files
for r, d, f in os.walk(path):
# match exclude pattern in current directory
found = False
for excluded_dir in exluded_directories_full_path:
if r.find(excluded_dir) >= 0:
found = True
if found:
continue
for file in f:
filename, extention = os.path.splitext(file)
if extention in search_extentions:
files.append(os.path.join(r, file))
return files
def initialize_options(self):
self.apply = 0
def finalize_options(self):
pass
def run(self):
root_dir = versioneer.get_root()
print("Project directory is: %s" % root_dir)
if self.apply:
self._c_formatter_command_line += ['-i']
else:
self._c_formatter_command_line += ['-output-replacements-xml']
import subprocess
bad_style_file_names = []
# C files handling
c_files = self._get_file_list(root_dir, self._c_file_extensions)
try:
for f in c_files:
command_output = subprocess.Popen(self._c_formatter_command_line + [f], stdout=subprocess.PIPE)
command_cout, command_cerr = command_output.communicate()
if not self.apply:
if command_cout.find(b'<replacement ') > 0:
bad_style_file_names.append(f)
except BaseException as original_error:
print("%s is not installed.\nPlease use: %s" % (self._c_formatter, self._c_formatter_install_msg))
print("Original error message is:\n", original_error)
exit(1)
# Python files handling
py_files = self._get_file_list(root_dir, self._py_file_extensions)
try:
for f in py_files:
if not self.apply:
command_output = subprocess.Popen(
self._py_checker_command_line + [f])
returncode = command_output.wait()
if returncode != 0:
bad_style_file_names.append(f)
else:
command_output = subprocess.Popen(
self._py_formatter_command_line + [f])
command_output.wait()
except BaseException as original_error:
print("%s is not installed.\nPlease use: %s" % (self._py_formatter, self._py_formatter_install_msg))
print("Original error message is:\n", original_error)
exit(1)
if bad_style_file_names:
print("Following files style need to be adjusted:")
for line in bad_style_file_names:
print(line)
print("%s Style check failed" % self._result_marker)
else:
print("%s Style check passed" % self._result_marker)
# Custom build commands
#
# These commands extend standard setuptools build procedure
#
sdc_build_commands = versioneer.get_cmdclass()
sdc_build_commands['build_doc'] = SDCBuildDoc
sdc_build_commands.update({'style': style})
sdc_version = versioneer.get_version().split('+')[0]
setup(name=SDC_NAME_STR,
version=sdc_version,
description='Numba* extension for compiling Pandas* operations',
long_description=readme(),
long_description_content_type='text/markdown',
classifiers=[
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python",
"Programming Language :: Python :: 3.7",
"Topic :: Software Development :: Compilers",
"Topic :: System :: Distributed Computing",
],
keywords='data analytics distributed Pandas Numba',
url='https://github.com/IntelPython/sdc',
license='BSD',
author='Intel Corporation',
maintainer="Intel Corp.",
maintainer_email="scripting@intel.com",
platforms=["Windows", "Linux", "Mac OS-X"],
python_requires='>=3.6',
packages=find_packages(),
package_data={'sdc.tests': ['*.bz2'], },
install_requires=[
'numpy>=1.16',
'pandas==1.2.0',
'pyarrow==4.0.1',
'numba==0.54.1',
'tbb'
],
cmdclass=sdc_build_commands,
ext_modules=_ext_mods,
entry_points={
"numba_extensions": [
"init = sdc:_init_extension",
]},
)