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# *****************************************************************************
# Copyright (c) 2019, Intel Corporation All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# Redistributions of source code must retain the above copyright notice,
# this list of conditions and the following disclaimer.
#
# Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
# PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
# CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
# EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# *****************************************************************************
from setuptools import setup, Extension, find_packages, Command
import platform
import os
from distutils.command import build
from distutils.spawn import spawn
# Note we don't import Numpy at the toplevel, since setup.py
# should be able to run without Numpy for pip to discover the
# build dependencies
import numpy.distutils.misc_util as np_misc
#import copy
import versioneer
# Inject required options for extensions compiled against the Numpy
# C API (include dirs, library dirs etc.)
np_compile_args = np_misc.get_info('npymath')
is_win = platform.system() == 'Windows'
# Sphinx User's Documentation Build
class build_doc(build.build):
description = "Build user's documentation"
def run(self):
spawn(['rm', '-rf', 'docs/_build', 'API_doc', 'docs/usersource/api/'])
spawn(['python', 'docs/rename_function.py'])
spawn(['sphinx-build', '-b', 'html', '-d', 'docs/_build/docstrees',
'-j1', 'docs/usersource', '-t', 'user', 'docs/_build/html'])
spawn(['python', 'docs/CleanRSTfiles.py'])
spawn(['sphinx-build', '-b', 'html', '-d', 'docs/_build/docstrees',
'-j1', 'docs/usersource', '-t', 'user', 'docs/_build/html'])
# Sphinx Developer's Documentation Build
class build_devdoc(build.build):
description = "Build developer's documentation"
def run(self):
spawn(['rm', '-rf', 'docs/_builddev'])
spawn(['sphinx-build', '-b', 'html', '-d', 'docs/_builddev/docstrees',
'-j1', 'docs/devsource', '-t', 'developer', 'docs/_builddev/html'])
def readme():
with open('README.rst', encoding='utf-8') as f:
return f.read()
# package environment variable is PREFIX during build time
if 'CONDA_BUILD' in os.environ:
PREFIX_DIR = os.environ['PREFIX']
else:
PREFIX_DIR = os.environ['CONDA_PREFIX']
# C libraries are in \Library on Windows
if is_win:
PREFIX_DIR += r'\Library'
try:
import pyarrow
except ImportError:
_has_pyarrow = False
else:
_has_pyarrow = True
_has_opencv = False
OPENCV_DIR = ""
if 'OPENCV_DIR' in os.environ:
_has_opencv = True
OPENCV_DIR = os.environ['OPENCV_DIR'].replace('"', '')
# TODO: fix opencv link
# import subprocess
# p_cvconf = subprocess.run(["pkg-config", "--libs", "--static","opencv"], stdout=subprocess.PIPE)
# cv_link_args = p_cvconf.stdout.decode().split()
ind = [PREFIX_DIR + '/include', ]
lid = [PREFIX_DIR + '/lib', ]
eca = ['-std=c++11', ] # '-g', '-O0']
ela = ['-std=c++11', ]
MPI_LIBS = ['mpi']
use_impi = False
if use_impi:
MPI_ROOT = os.environ['I_MPI_ROOT']
MPI_INC = MPI_ROOT + '/include64/'
MPI_LIBDIR = MPI_ROOT + '/lib64/'
MPI_LIBS = ['mpifort', 'mpi', 'mpigi']
ind = [PREFIX_DIR + '/include', MPI_INC]
lid = [PREFIX_DIR + '/lib', MPI_LIBDIR]
if is_win:
# use Intel MPI on Windows
MPI_LIBS = ['impi']
io_libs = MPI_LIBS
boost_libs = []
if not is_win:
boost_libs = ['boost_filesystem', 'boost_system']
io_libs += boost_libs
ext_io = Extension(name="sdc.hio",
sources=["sdc/io/_io.cpp", "sdc/io/_csv.cpp"],
depends=["sdc/_hpat_common.h", "sdc/_distributed.h",
"sdc/_import_py.h", "sdc/io/_csv.h",
"sdc/_datetime_ext.h"],
libraries=boost_libs,
include_dirs=ind + np_compile_args['include_dirs'],
library_dirs=lid,
extra_compile_args=eca,
extra_link_args=ela,
language="c++"
)
ext_transport_mpi = Extension(name="sdc.transport_mpi",
sources=["sdc/transport/hpat_transport_mpi.cpp"],
depends=["sdc/_distributed.h"],
libraries=io_libs,
include_dirs=ind,
library_dirs=lid,
extra_compile_args=eca,
extra_link_args=ela,
language="c++"
)
ext_transport_seq = Extension(name="sdc.transport_seq",
sources=["sdc/transport/hpat_transport_single_process.cpp"],
depends=["sdc/_distributed.h"],
include_dirs=ind,
library_dirs=lid,
extra_compile_args=eca,
extra_link_args=ela,
language="c++"
)
ext_hdist = Extension(name="sdc.hdist",
sources=["sdc/_distributed.cpp"],
depends=["sdc/_hpat_common.h"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_chiframes = Extension(name="sdc.chiframes",
sources=["sdc/_hiframes.cpp"],
depends=["sdc/_hpat_sort.h"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_dict = Extension(name="sdc.hdict_ext",
sources=["sdc/_dict_ext.cpp"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
ext_set = Extension(name="sdc.hset_ext",
sources=["sdc/_set_ext.cpp"],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=ind,
library_dirs=lid,
)
str_libs = np_compile_args['libraries']
if not is_win:
str_libs += ['boost_regex']
ext_str = Extension(name="sdc.hstr_ext",
sources=["sdc/_str_ext.cpp"],
libraries=str_libs,
define_macros=np_compile_args['define_macros'] + [('USE_BOOST_REGEX', None)],
extra_compile_args=eca,
extra_link_args=ela,
include_dirs=np_compile_args['include_dirs'] + ind,
library_dirs=np_compile_args['library_dirs'] + lid,
)
ext_dt = Extension(name="sdc.hdatetime_ext",
sources=["sdc/_datetime_ext.cpp"],
libraries=np_compile_args['libraries'],
define_macros=np_compile_args['define_macros'],
extra_compile_args=['-std=c++11'],
extra_link_args=['-std=c++11'],
include_dirs=np_compile_args['include_dirs'],
library_dirs=np_compile_args['library_dirs'],
language="c++"
)
pq_libs = ['arrow', 'parquet']
# Windows MSVC can't have boost library names on command line
# auto-link magic of boost should be used
if not is_win:
pq_libs += ['boost_filesystem']
# if is_win:
# pq_libs += ['arrow', 'parquet']
# else:
# # seperate parquet reader used due to ABI incompatibility of arrow
# pq_libs += ['hpat_parquet_reader']
ext_parquet = Extension(name="sdc.parquet_cpp",
sources=["sdc/io/_parquet.cpp"],
libraries=pq_libs,
include_dirs=['.'] + ind,
define_macros=[('BUILTIN_PARQUET_READER', None)],
extra_compile_args=eca,
extra_link_args=ela,
library_dirs=lid,
)
cv_libs = ['opencv_core', 'opencv_imgproc', 'opencv_imgcodecs', 'opencv_highgui']
# XXX cv lib file name needs version on Windows
if is_win:
cv_libs = [l + '331' for l in cv_libs]
ext_cv_wrapper = Extension(name="sdc.cv_wrapper",
sources=["sdc/_cv.cpp"],
include_dirs=[OPENCV_DIR + '/include'] + ind,
library_dirs=[os.path.join(OPENCV_DIR, 'lib')] + lid,
libraries=cv_libs,
#extra_link_args = cv_link_args,
language="c++",
)
_ext_mods = [ext_hdist, ext_chiframes, ext_dict, ext_set, ext_str, ext_dt, ext_io, ext_transport_mpi, ext_transport_seq]
if _has_pyarrow:
_ext_mods.append(ext_parquet)
if _has_opencv:
_ext_mods.append(ext_cv_wrapper)
# Custom build commands
#
# These commands extends standart setuptools build procedure
#
sdc_build_commands = versioneer.get_cmdclass()
sdc_build_commands['build_doc'] = build_doc
sdc_build_commands['build_devdoc'] = build_devdoc
class style(Command):
""" Command to check and adjust code style
Usage:
To check style: python ./setup.py style
To fix style: python ./setup.py style -a
"""
user_options = [
('apply', 'a', 'Apply codestyle changes to sources.')
]
description = "Code style check and apply (with -a)"
boolean_options = []
_result_marker = "Result:"
_project_directory_excluded = ['build', '.git']
_c_formatter = 'clang-format-6.0'
_c_formatter_install_msg = 'pip install clang'
_c_formatter_command_line = [_c_formatter, '-style=file']
_c_file_extensions = ['.h', '.c', '.hpp', '.cpp']
_py_checker = 'pycodestyle'
_py_formatter = 'autopep8'
_py_formatter_install_msg = 'pip install --upgrade autopep8\npip install --upgrade pycodestyle'
# E265 and W503 excluded because I didn't find a way to apply changes automatically
_py_checker_command_line = [_py_checker, '--ignore=E265,W503']
_py_formatter_command_line = [_py_formatter, '--in-place', '--aggressive', '--aggressive']
_py_file_extensions = ['.py']
def _get_file_list(self, path, search_extentions):
""" Return file list to be adjusted or checked
path - is the project base path
search_extentions - list of strings with files extension to search recurcivly
"""
files = []
exluded_directories_full_path = [os.path.join(path, excluded_dir)
for excluded_dir in self._project_directory_excluded]
# r=root, d=directories, f = files
for r, d, f in os.walk(path):
# match exclude pattern in current directory
found = False
for excluded_dir in exluded_directories_full_path:
if r.find(excluded_dir) >= 0:
found = True
if found:
continue
for file in f:
filename, extention = os.path.splitext(file)
if extention in search_extentions:
files.append(os.path.join(r, file))
return files
def initialize_options(self):
self.apply = 0
def finalize_options(self):
pass
def run(self):
root_dir = versioneer.get_root()
print("Project directory is: %s" % root_dir)
if self.apply:
self._c_formatter_command_line += ['-i']
else:
self._c_formatter_command_line += ['-output-replacements-xml']
import subprocess
bad_style_file_names = []
# C files handling
c_files = self._get_file_list(root_dir, self._c_file_extensions)
try:
for f in c_files:
command_output = subprocess.Popen(self._c_formatter_command_line + [f], stdout=subprocess.PIPE)
command_cout, command_cerr = command_output.communicate()
if not self.apply:
if command_cout.find(b'<replacement ') > 0:
bad_style_file_names.append(f)
except BaseException as original_error:
print("%s is not installed.\nPlease use: %s" % (self._c_formatter, self._c_formatter_install_msg))
print("Original error message is:\n", original_error)
exit(1)
# Python files handling
py_files = self._get_file_list(root_dir, self._py_file_extensions)
try:
for f in py_files:
if not self.apply:
command_output = subprocess.Popen(
self._py_checker_command_line + [f])
returncode = command_output.wait()
if returncode != 0:
bad_style_file_names.append(f)
else:
command_output = subprocess.Popen(
self._py_formatter_command_line + [f])
command_output.wait()
except BaseException as original_error:
print("%s is not installed.\nPlease use: %s" % (self._py_formatter, self._py_formatter_install_msg))
print("Original error message is:\n", original_error)
exit(1)
if bad_style_file_names:
print("Following files style need to be adjusted:")
for line in bad_style_file_names:
print(line)
print("%s Style check failed" % self._result_marker)
else:
print("%s Style check passed" % self._result_marker)
sdc_build_commands.update({'style': style})
setup(name='sdc',
version=versioneer.get_version(),
description='compiling Python code for clusters',
long_description=readme(),
classifiers=[
"Development Status :: 2 - Pre-Alpha",
"Intended Audience :: Developers",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python",
"Programming Language :: Python :: 3.6",
"Topic :: Software Development :: Compilers",
"Topic :: System :: Distributed Computing",
],
keywords='data analytics cluster',
url='https://github.com/IntelPython/sdc',
author='Intel',
packages=find_packages(),
package_data={'sdc.tests': ['*.bz2'], },
install_requires=['numba'],
extras_require={'Parquet': ["pyarrow"], },
cmdclass=sdc_build_commands,
ext_modules=_ext_mods,
entry_points={
"numba_extensions": [
"init = sdc:_init_extension",
],
},
)