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executable file
·432 lines (365 loc) · 14.9 KB
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#!/usr/bin/env python
import argparse
import os
import re
import sys
from packaging.version import Version
from dotenv import dotenv_values
def parameter_option(key, option):
"""Return value of `option` associated with parameter `key`.
If no option is found in `PARAMETER_OPTIONS`, default value from
`PARAMETER_OPTION_DEFAULTS` is returned.
"""
PARAMETER_OPTION_DEFAULTS = {
"indent": 0,
"newline_if_set": False,
"newline_indent": 0,
"remove_line_if_empty": False,
}
PARAMETER_OPTIONS = {
"PYPROJECT_PY_MODULES": {
"indent": 8,
"newline_if_set": True,
"newline_indent": 4,
},
"PYPROJECT_DEPENDENCIES": {"indent": 8, "remove_line_if_empty": True},
}
default = PARAMETER_OPTION_DEFAULTS.get(option)
if key not in PARAMETER_OPTIONS.keys():
return default
return PARAMETER_OPTIONS[key].get(option, default)
# Copied from scikit-ci/ci/utils.py
def indent(text, prefix, predicate=None):
"""Adds 'prefix' to the beginning of selected lines in 'text'.
If 'predicate' is provided, 'prefix' will only be added to the lines
where 'predicate(line)' is True. If 'predicate' is not provided,
it will default to adding 'prefix' to all non-empty lines that do not
consist solely of whitespace characters.
Copied from textwrap.py available in python 3 (cpython/cpython@a2d2bef)
"""
if predicate is None:
def predicate(line):
return line.strip()
def prefixed_lines():
for line in text.splitlines(True):
yield prefix + line if predicate(line) else line
return "".join(prefixed_lines())
def list_to_str(list_, newline=True):
sep = ", "
if newline:
sep = ",\n"
return sep.join([f'"{item}"' for item in list_])
def configure(template_file, parameters, output_file):
"""Configure `template_file` into `output_file` given a dictionary of
`parameters`.
"""
updated_lines = []
with open(template_file) as file_:
lines = file_.readlines()
for line in lines:
append = True
for key in parameters.keys():
value = parameters[key].strip()
if (
key in line
and not value
and parameter_option(key, "remove_line_if_empty")
):
append = False
break
block_indent = " " * parameter_option(key, "indent")
value = indent(value, block_indent)
newline_indent = " " * parameter_option(key, "newline_indent")
if value.strip() and parameter_option(key, "newline_if_set"):
value = f"\n{value}\n{newline_indent}"
line = line.replace(f"@{key}@", value)
# Windows paths need to have backslashes escaped preserved in writing of files
line = line.replace("\\", "\\\\")
if append:
updated_lines.append(line)
with open(output_file, "w") as file_:
file_.writelines(updated_lines)
def from_group_to_wheel(group):
return f"itk-{group.lower()}"
def update_wheel_pyproject_toml_parameters(
base_params: dict,
package_env_config: dict,
SCRIPT_NAME: str,
wheel_names: list,
wheel_dependencies: dict,
):
"""Build and return a mapping of wheel_name -> pyproject parameters.
This function is a pure transformation and does not mutate global state.
"""
PYPROJECT_PY_PARAMETERS = {}
for wheel_name in wheel_names:
params = dict(base_params)
# generator
params["PYPROJECT_GENERATOR"] = f"python {SCRIPT_NAME} '{wheel_name}'"
# name
if wheel_name == "itk-meta":
params["PYPROJECT_NAME"] = "itk"
params["PYPROJECT_PLATLIB"] = r"false"
else:
params["PYPROJECT_NAME"] = wheel_name
# long description
if wheel_name == "itk-core":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"This package contain the toolkit framework used"
" by other modules. There are common base classes for data objects and process"
" objects, basic data structures such as Image, Mesh, QuadEdgeMesh, and"
" SpatialObjects, and common functionality for operations such as finite"
" differences, image adaptors, or image transforms."
)
elif wheel_name == "itk-filtering":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"These packages contains filters that modify data"
" in the ITK pipeline framework. These filters take an input object, such as an"
" Image, and modify it to create an output. Filters can be chained together to"
" create a processing pipeline."
)
elif wheel_name == "itk-io":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"This package contains classes for reading and writing images and other data objects."
)
elif wheel_name == "itk-numerics":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"This package contains basic numerical tools and algorithms that"
" have general applications outside of imaging."
)
elif wheel_name == "itk-registration":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"This package addresses the registration problem: "
" find the spatial transformation between two images. This is a high"
" level package that makes use of many lower level packages."
)
elif wheel_name == "itk-segmentation":
params["PYPROJECT_LONG_DESCRIPTION"] += (
r"\n\n"
"This package addresses the segmentation problem: "
" partition the image into classified regions (labels). This is a high"
" level package that makes use of many lower level packages."
)
# cmake_args
params["PYPROJECT_CMAKE_ARGS"] = list_to_str(
[
f"-DITK_SOURCE_DIR={package_env_config['ITK_SOURCE_DIR']}",
f"-DITK_GIT_TAG:STRING={package_env_config['ITK_GIT_TAG']}",
f"-DITK_PACKAGE_VERSION:STRING={package_env_config['ITK_PACKAGE_VERSION']}",
"-DITK_WRAP_unsigned_short:BOOL=ON",
"-DITK_WRAP_double:BOOL=ON",
"-DITK_WRAP_complex_double:BOOL=ON",
"-DITK_WRAP_IMAGE_DIMS:STRING=2;3;4",
"-DITK_WRAP_DOC:BOOL=ON",
f"-DITKPythonPackage_WHEEL_NAME:STRING={wheel_name}",
],
True,
)
# install_requires
wheel_depends = list(wheel_dependencies[wheel_name])
# py_modules
if wheel_name != "itk-core":
params["PYPROJECT_PY_MODULES"] = r""
else:
wheel_depends.append("numpy")
params["PYPROJECT_DEPENDENCIES"] = list_to_str(wheel_depends)
PYPROJECT_PY_PARAMETERS[wheel_name] = params
return PYPROJECT_PY_PARAMETERS
def get_wheel_names(SCRIPT_DIR: str):
with open(os.path.join(SCRIPT_DIR, "WHEEL_NAMES.txt")) as _file:
return [wheel_name.strip() for wheel_name in _file.readlines()]
def get_py_api():
# Return empty for Python < 3.11, otherwise a cp tag like 'cp311'
if sys.version_info < (3, 11):
return ""
return f"cp{sys.version_info.major}{sys.version_info.minor}"
def get_wheel_dependencies(SCRIPT_DIR: str, version: str, wheel_names: list):
"""Return a dictionary of the ITK wheel dependencies."""
all_depends = {}
regex_group_depends = r"set\s*\(\s*ITK\_GROUP\_([a-zA-Z0-9\_\-]+)\_DEPENDS\s*([a-zA-Z0-9\_\-\s]*)\s*" # noqa: E501
pattern = re.compile(regex_group_depends)
with open(os.path.join(SCRIPT_DIR, "..", "CMakeLists.txt")) as file_:
for line in file_.readlines():
match = re.search(pattern, line)
if not match:
continue
wheel = from_group_to_wheel(match.group(1))
_wheel_depends = [
from_group_to_wheel(group) + "==" + version
for group in match.group(2).split()
]
all_depends[wheel] = _wheel_depends
all_depends["itk-meta"] = [
wheel_name + "==" + version
for wheel_name in wheel_names
if wheel_name != "itk-meta"
]
all_depends["itk-meta"].append("numpy")
return all_depends
def build_base_pyproject_parameters(
package_env_config: dict, SCRIPT_NAME: str, itk_package_version: str
):
ITK_SOURCE_README: str = os.path.join(
package_env_config["ITK_SOURCE_DIR"], "README.md"
)
"""Return the base pyproject parameters for 'itk'."""
return {
"PYPROJECT_GENERATOR": f"python {SCRIPT_NAME} 'itk'",
"PYPROJECT_NAME": r"itk",
"PYPROJECT_VERSION": itk_package_version,
"PYPROJECT_CMAKE_ARGS": r"",
"PYPROJECT_PY_API": get_py_api(),
"PYPROJECT_PLATLIB": r"true",
"ITK_SOURCE_DIR": package_env_config["ITK_SOURCE_DIR"],
"ITK_SOURCE_README": ITK_SOURCE_README,
"PYPROJECT_PY_MODULES": list_to_str(
[
"itkBase",
"itkConfig",
"itkExtras",
"itkHelpers",
"itkLazy",
"itkTemplate",
"itkTypes",
"itkVersion",
"itkBuildOptions",
]
),
"PYPROJECT_DOWNLOAD_URL": r"https://github.com/InsightSoftwareConsortium/ITK/releases",
"PYPROJECT_DESCRIPTION": r"ITK is an open-source toolkit for multidimensional image analysis", # noqa: E501
"PYPROJECT_LONG_DESCRIPTION": r"ITK is an open-source, cross-platform library that "
"provides developers with an extensive suite of software "
"tools for image analysis. Developed through extreme "
"programming methodologies, ITK employs leading-edge "
"algorithms for registering and segmenting "
"multidimensional scientific images.",
"PYPROJECT_EXTRA_KEYWORDS": r'"scientific", "medical", "image", "imaging"',
"PYPROJECT_DEPENDENCIES": r"",
}
def main():
# Resolve script information locally
SCRIPT_DIR = os.path.dirname(__file__)
SCRIPT_NAME = os.path.basename(__file__)
# Defaults
default_output_dir = os.path.abspath(os.path.join(SCRIPT_DIR, ".."))
# Parse arguments
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
description="""CLI allowing to configure ``pyproject.toml`` found in the `` ITKPythonPackage ``
source tree.
Different versions of ``pyproject.toml`` can be generated based on the value
of the `wheel_name` positional parameter.
Usage::
pyproject_configure.py [-h] [--output-dir OUTPUT_DIR] [--env-file package.env] wheel_name
positional arguments:
wheel_name
optional arguments:
-h, --help show this help message and exit
--output-dir OUTPUT_DIR
Output directory for configured 'pyproject.toml'
(default: /work)
Accepted values for `wheel_name` are ``itk`` and all values read from
``WHEEL_NAMES.txt``.
""",
)
parser.add_argument("wheel_name")
parser.add_argument(
"--output-dir",
type=str,
help="Output directory for configured 'pyproject.toml'",
default=default_output_dir,
)
# Compute default env file relative to project root at runtime
ipp_dir: str = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
default_env_file: str = os.path.join(ipp_dir, "build", "package.env")
parser.add_argument(
"--env-file",
type=str,
help=".env file with parameters used to configured 'pyproject.toml'",
default=default_env_file,
)
args = parser.parse_args()
print(f"Reading configuration settings from {args.env_file}")
package_env_config = dotenv_values(args.env_file)
# Version needs to be python PEP 440 compliant (no leading v)
PEP440_VERSION: str = package_env_config["ITK_PACKAGE_VERSION"].removeprefix("v")
try:
Version(
PEP440_VERSION
) # Raise InvalidVersion exception if not PEP 440 compliant
except ValueError:
print(f"Invalid PEP 440 version: {PEP440_VERSION}")
print(
f"Please check the ITK_PACKAGE_VERSION environment variable in {args.env_file}."
)
sys.exit(1)
# Write itkVersion.py file to report ITK version in python.
write_itkVersion_py(
os.path.join(default_output_dir, "itkVersion.py"), PEP440_VERSION
)
base_params = build_base_pyproject_parameters(
package_env_config, SCRIPT_NAME, PEP440_VERSION
)
wheel_names = get_wheel_names(SCRIPT_DIR)
wheel_dependencies = get_wheel_dependencies(
SCRIPT_DIR, base_params["PYPROJECT_VERSION"], wheel_names
)
PYPROJECT_PY_PARAMETERS = {"itk": dict(base_params)}
PYPROJECT_PY_PARAMETERS.update(
update_wheel_pyproject_toml_parameters(
base_params,
package_env_config,
SCRIPT_NAME,
wheel_names,
wheel_dependencies,
)
)
if args.wheel_name not in PYPROJECT_PY_PARAMETERS.keys():
print(f"Unknown wheel name '{args.wheel_name}'")
sys.exit(1)
# Configure 'pyproject.toml'
output_file = os.path.join(args.output_dir, "pyproject.toml")
print(f"Generating: {output_file}")
template = os.path.join(SCRIPT_DIR, "pyproject.toml.in")
configure(template, PYPROJECT_PY_PARAMETERS[args.wheel_name], output_file)
# Configure or remove 'itk/__init__.py'
# init_py = os.path.join(args.output_dir, "itk", "__init__.py")
# if args.wheel_name in ["itk", "itk-core"]:
# with open(init_py, 'w') as file_:
# file_.write("# Stub required for package\n")
# else:
# if os.path.exists(init_py):
# os.remove(init_py)
def write_itkVersion_py(filename: str, itk_package_version: str):
itk_version_python_code = f"""
VERSION: str = '{itk_package_version}'
def get_versions() -> str:
\"\"\"Returns versions for the ITK Python package.
from itkVersion import get_versions
# Returns the ITK repository version
get_versions()['version']
# Returns the package version. Since GitHub Releases do not support the '+'
# character in file names, this does not contain the local version
# identifier in nightly builds, i.e.
#
# '6.0.1.dev20251126'
#
# instead of
#
# '6.0.1.dev20251126+139.g922f2d9'
get_versions()['package-version']
\"\"\"
versions = {{}}
versions['version'] = VERSION
versions['package-version'] = VERSION.split('+')[0]
return versions
"""
with open(filename, "w") as wfid:
wfid.write(itk_version_python_code)
if __name__ == "__main__":
main()