Issues

• deep_lift_shap convergence-delta check silently corrupted by trailing singleton output dim

  Genentech/gReLU#202 · Filter by author avantikalal opened on Sep 30, 2026

• As it turns out, you can resize your features right off the chromosome

  Genentech/gReLU#176 · Filter by author dagarfield opened on Feb 19, 2026
  1

• Tutorial Request: Custom Model Integration with gReLU

  Genentech/gReLU#171 · Filter by author yuanlizhanshi opened on Dec 9, 2025

• Weird OOM in 1_inference.ipynb

  Genentech/gReLU#154 · Filter by author simwester opened on Jul 8, 2025

• trim_pwm inconsistency

  Genentech/gReLU#125 · Filter by author suragnair opened on Mar 12, 2025

• Can not use 'LightningModelEnsemble' to design sequences

  bug
  Genentech/gReLU#110 · Filter by author cdedonno opened on Mar 5, 2025
  1

  

• Enable genomicarrays backend for bigwigdataloader

  v1.1
  Genentech/gReLU#92 · Filter by author avantikalal opened on Jan 31, 2025
  

• Different inference results under different batch size

  bug
  Genentech/gReLU#85 · Filter by author HelloWorldLTY opened on Dec 10, 2024
  2

• Questions about early stopping

  enhancement
  Genentech/gReLU#84 · Filter by author HelloWorldLTY opened on Nov 25, 2024
  1

• Incompatibility between modisco with ISM and Specificify transform with subtract function

  bugv1.1
  Genentech/gReLU#80 · Filter by author dagarfield opened on Nov 8, 2024
  1

• Support indels

  enhancement
  Genentech/gReLU#65 · Filter by author avantikalal opened on Oct 15, 2024
  

• Remove pretrainedmodel classes

  enhancementv1.1
  Genentech/gReLU#58 · Filter by author avantikalal opened on Oct 14, 2024
  

• Enable deepshap for enformer models

  enhancement
  Genentech/gReLU#56 · Filter by author avantikalal opened on Oct 14, 2024
  2

  

• guidelines to implement custom models

  enhancementv1.1
  Genentech/gReLU#47 · Filter by author MiqG opened on Sep 19, 2024
  2

• Questions about reading variants

  Genentech/gReLU#45 · Filter by author HelloWorldLTY opened on Sep 12, 2024
  3

• Making train_params and model_params functional to add documentation and avoid duplication

  enhancementv1.1
  Genentech/gReLU#38 · Filter by author gokceneraslan opened on Aug 5, 2024
  6

  

• Update doc string and input allowances for grelu.sequence.utils.resize

  bugdocumentationv1.1
  Genentech/gReLU#34 · Filter by author dagarfield opened on Jul 26, 2024
  

• Loading models from the checkpoint leads to package version conflicts

  Genentech/gReLU#28 · Filter by author MuhammedHasan opened on Jul 19, 2024
  

• Training with poisson_multinomial + label preprocessing

  Genentech/gReLU#17 · Filter by author fteufel opened on Jul 12, 2024