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Possible Integration with iCLIP files #1
Description
iCLIP greatly increases RNA binding map resolution. For possible acquisition of iCLIP files, large datasets are preferred, to minimise batch effects.
Considered datasets:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230846, from "C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes"
Activity
A-Kaizeler-A commentedon Jul 20, 2026
Could not find a proper way to integrate the iCLIP files with my processing of the eCLIP files/metagenome creation. I believe it fails due to "excessive resolution". eCLIPSE/Charm requires peaks with at least 3 nt for proper metagenomic attribution.
A-Kaizeler-A commentedon Sep 10, 2026
Re-opened as I am confident a "re-structuring" from the ground up might solve the issue.