14:43:55 Downloading https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000006548_3702_ARATH_v2.tar to /home/horace/scratch/protein-datasets/alphafold/UP000006548_3702_ARATH_v2.tar
Traceback (most recent call last):
File "script/pretrain.py", line 50, in <module>
dataset = core.Configurable.load_config_dict(cfg.dataset)
File "/home/horace/.conda/envs/drug/lib/python3.7/site-packages/torchdrug/core/core.py", line 269, in load_config_dict
return cls(**new_config)
File "/home/horace/.conda/envs/drug/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/horace/.conda/envs/drug/lib/python3.7/site-packages/torchdrug/core/core.py", line 288, in wrapper
return init(self, *args, **kwargs)
File "/home/horace/.conda/envs/drug/lib/python3.7/site-packages/torchdrug/datasets/alphafolddb.py", line 122, in __init__
tar_file = utils.download(self.urls[species_id], path, md5=self.md5s[species_id])
File "/home/horace/.conda/envs/drug/lib/python3.7/site-packages/torchdrug/utils/file.py", line 31, in download
urlretrieve(url, save_file)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 247, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 531, in open
response = meth(req, response)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 569, in error
return self._call_chain(*args)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 503, in _call_chain
result = func(*args)
File "/home/horace/.conda/envs/drug/lib/python3.7/urllib/request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 404: Not Found
It seems that the file located in "https://ftp.ebi.ac.uk/pub/databases/alphafold/latest/UP000006548_3702_ARATH_v2.tar" really doesn't exist. When I entered this url in my browser, it also noticed me that the file doesn't exist.