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1. Commits on Nov 20, 2013

   • updating example to latest API

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2. Commits on Nov 19, 2013

   • Fix ScopFactory bug

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     sbliven

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   • Fix a NullPointer in createAFPChain

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3. Commits on Nov 13, 2013

   • Check in of Cox Regression code for survival analysis ported from the R survival package

     

     Scooter

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   • Test Committ

     

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4. Commits on Nov 7, 2013

   • renaming submodule

     

     Andreas Prlic

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   • adding new survival module

     

     Andreas Prlic

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   • adding new survival module

     

     Andreas Prlic

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5. Commits on Nov 4, 2013

   • uncommenting version 1.75B and .175C until #69 gets resolved

     

     Andreas Prlic

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6. Commits on Nov 2, 2013

   • small performance improvement

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   • adding a unit test fot #68

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   • fixing #68

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7. Commits on Nov 1, 2013

   • Adding setScopVersion() method to ScopDatabase

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   • Adding version to RemoteScopInstallation

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   • Implementing comments for remote SCOP installations

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   • Handling empty XML responses in RemoteScopInstallation

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   • Added ScopDatabase node test

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   • Adding RemoteScopInstallationTest

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   • Fixing RemoteScopInstallation version

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   • Better testing for BerkeleyScopInstallation

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   • Provide much more extensive tests for ScopDatabase.

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   • Removing hard-coded Scop version strings

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   • Streamlining ScopFactory

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   • Adding LocalScopDatabase interface

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   • Incrementing junit version

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   • Removing URL print statements from RemoteScopInstallation

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   • Fixing #50 Error in RemoteScopInstallation

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   • Merge pull request #65 from pwrose/master

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8. Commits on Oct 31, 2013

   • Refactored ModelTransformationMatrix and renamed to

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9. Commits on Oct 29, 2013

   • Merge branch 'master' of github.com:biojava/biojava

     

     Andreas Prlic

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   • merging in new code for parsing upcoming wwPDB validation files

     

     Andreas Prlic

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   • adding demo for cath domains

     

     Andreas Prlic

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   • demo of working with large structures

     

     Andreas Prlic

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   • removing print

     

     Andreas Prlic

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   • updating

     

     Andreas Prlic

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