Issues

• Question: Does panHiTE require specifying whether the genome is from plants?

  CSU-KangHu/HiTE#106 · Filter by author jianghao0799 opened on Aug 1, 2026

• Output differences between version 3.2, 3.3.2 and 3.3.3

  CSU-KangHu/HiTE#105 · Filter by author jkh00 opened on May 29, 2026

• error for conda install

  CSU-KangHu/HiTE#104 · Filter by author Zhenlisme opened on May 11, 2026

• TE classification issues

  CSU-KangHu/HiTE#103 · Filter by author dmckeow opened on Apr 9, 2026

• HiTE stuck at “Start 3.1: Coarse-grained boundary mapping”

  CSU-KangHu/HiTE#101 · Filter by author ChuanzhengWei opened on Feb 28, 2026
  2

• reset folder

  CSU-KangHu/HiTE#100 · Filter by author frouin opened on Feb 3, 2026

• Chromosome Length Issue

  CSU-KangHu/HiTE#99 · Filter by author WangZhSi opened on Jan 22, 2026

• Missing *.domain files in pan_run_hite_single output

  CSU-KangHu/HiTE#98 · Filter by author CJHtea opened on Jan 19, 2026
  1

• What are the GPU requirements for the panHiTE workflow?

  CSU-KangHu/HiTE#97 · Filter by author wiley1iu opened on Dec 16, 2025

• missing output files panHiTE.CorePan_fitmodel.pdf and panHiTE.CorePan_fitsmooth.pdf

  CSU-KangHu/HiTE#95 · Filter by author 950823 opened on Dec 5, 2025

• Issue: Inconsistent GFF Attribute Handling and ID Requirements

  CSU-KangHu/HiTE#94 · Filter by author elenitskorda opened on Dec 4, 2025

• Bug Report: LTR Element Identification Fails When Running HiTE via Singularity Container

  CSU-KangHu/HiTE#93 · Filter by author Scy-bio opened on Dec 3, 2025
  3

• Suggested bug fix for ready_for_MSA.sh

  CSU-KangHu/HiTE#92 · Filter by author markcharder opened on Nov 30, 2025
  1

• Result directory is empty

  CSU-KangHu/HiTE#91 · Filter by author 1690834643 opened on Nov 11, 2025

• Error executing process > 'pan_generate_bam_for_RNA_seq (2)'

  CSU-KangHu/HiTE#89 · Filter by author 950823 opened on Nov 3, 2025
  1

• Issue during install

  CSU-KangHu/HiTE#88 · Filter by author brysonab opened on Oct 15, 2025
  2

• Workflow execution completed unsuccessfully

  CSU-KangHu/HiTE#87 · Filter by author 950823 opened on Oct 10, 2025
  4

• Use ”--work_dir“, but the resoult file cannot be found.

  CSU-KangHu/HiTE#86 · Filter by author Tongjiazhou opened on Oct 10, 2025
  2

• Missing output file(s) confident_TE.cons.fa expected by process pan_run_hite_single (14)

  CSU-KangHu/HiTE#85 · Filter by author jeyarajsiddhu opened on Oct 8, 2025
  2

• Missing output file(s) confident_TE.cons.fa

  CSU-KangHu/HiTE#84 · Filter by author zhangguoxuan880 opened on Sep 25, 2025
  2

• Some 0 byte files generated as outputs

  CSU-KangHu/HiTE#83 · Filter by author liechi opened on Sep 25, 2025
  2

• ERROR: Process requirement exceeds available CPUs -- req: 2; avail: 1

  CSU-KangHu/HiTE#82 · Filter by author cslamo opened on Sep 24, 2025
  1

• Why is the size of the result file different each time it is run using the demo data of the example? Isn't the result produced by each run different?

  CSU-KangHu/HiTE#81 · Filter by author changchuanjun opened on Sep 22, 2025
  3

• Singularity Container Error "BLAST Database error: No alias or index file found for protein database"

  CSU-KangHu/HiTE#76 · Filter by author SColson82 opened on Sep 8, 2025
  1

• How is the annotation performance in the large genome (>10G)

  CSU-KangHu/HiTE#3 · Filter by author haoyongchao opened on Jul 9, 2024
  21