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1. Commits on Mar 9, 2016

   • Removing template messages

     sbliven

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   • Remove trailing whitespace globally from .java files

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     sbliven

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   • Running addlicense.sh

     sbliven

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   • Better docs for new FileParsingParam

     josemduarte

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   • Better docs and an empty test

     josemduarte

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   • Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

     josemduarte

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   • Merge pull request #427 from abradle/master

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     josemduarte

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   • Merge branch 'master' into removeLoadChemCompInfo

     josemduarte

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2. Commits on Mar 8, 2016

   • Fixing a few bugs that arose after loadChemCompInfo removal, #426

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     josemduarte

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   • Fix PDBFileParser bug with missing trailing spaces.

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     sbliven

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   • Fixed DBRef#toPDB() method to give 80 characters line

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     sroughley

     authored and

     sbliven

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   • Merge branch 'master' into removeLoadChemCompInfo

     josemduarte

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   • "Fix" #88. Improve documentation with a warning about getSymmetryOrder

     sbliven

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   • Merge remote-tracking branch 'biojava/master'

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   • Honor prefixes for StructureNames

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     sbliven

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   • Tests pass now, except for TestLongPdbVsMmcif

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   • Some updates for when dealing with internal and not public chain ids as the primary id

     abradle

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   • Removing loadChemCompInfo, some tests don't pass yet

     josemduarte

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   • Better docs

     josemduarte

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3. Commits on Mar 7, 2016

   • Fixed bug: bonds creation needs to be called after chain mapping is

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     josemduarte

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   • Changing TestBond to use mmcif

     josemduarte

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   • Merge pull request #424 from edlunde-dnastar/zipchem

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     josemduarte

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   • Use the SLF4J for logging rather than Java logger for ZipChemCommpProvider and unit test.

     

     Matt Larson

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   • Merge pull request #421 from josemduarte/bondsRewrite

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     josemduarte

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   • Final CeSymm display options before release

     lafita

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   • Set default value for removing download files = true.

     larsonmattr

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   • ZipChemCompProvider cleanup:

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     larsonmattr

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4. Commits on Mar 5, 2016

   • adding a new access method to retrieve the dimensions of the bounding box.

     andreasprlic

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5. Commits on Mar 4, 2016

   • Better logging

     josemduarte

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   • Fix #385. Support BIO: identifiers

     sbliven

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   • Refactoring BioUnitDataProviderFactory to take class arguments

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     sbliven

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   • Implementing #408

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     josemduarte

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   • Refactoring of Structure ssbonds interface, as described in #341

     josemduarte

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6. Commits on Mar 3, 2016

   • Removed some warnings and Structure.getConnections calls

     josemduarte

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   • Modifying to use ZipFileSystem for appending files.

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     larsonmattr

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