BiocFileCache

Manage Files Across Sessions

Bioconductor version: 3.23 · Package version: 3.2.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

DOI: 10.18129/B9.bioc.BiocFileCache

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocFileCache")

Details

Maintainer	Lori Shepherd <lori.shepherd@roswellpark.org>
Author	Lori Shepherd [aut, cre], Martin Morgan [aut]
License	Artistic-2.0
Bug Reports	https://github.com/Bioconductor/BiocFileCache/issues
Source branch	RELEASE_3_23
Build report	Bioconductor build system, r-universe
biocViews	DataImport, Software
Package Short Url	https://bioconductor.org/packages/BiocFileCache/

Citation

From within R, enter citation("BiocFileCache"):

Lori Shepherd, Martin Morgan. BiocFileCache: Manage Files Across Sessions. doi:10.18129/B9.bioc.BiocFileCache, R package version 3.2.0, https://bioconductor.org/packages/BiocFileCache.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	BiocFileCache_3.2.0.tar.gz
Windows binary (x86_64)	BiocFileCache_3.2.0.zip
macOS binary (arm64)	BiocFileCache_3.2.0.tgz
macOS binary (x86_64)	BiocFileCache_3.2.0.tgz

Dependencies

Depends: R (>= 3.4.0), dbplyr (>= 1.0.0)

Imports: methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl, httr2

Suggests: testthat, knitr, BiocStyle, rmarkdown, rtracklayer

Reverse dependencies

Depends On Me (8): AnnotationHub, easylift, ExperimentHub, JASPAR2022, JASPAR2024, RcwlPipelines, scATAC.Explorer, TMExplorer

Imports Me (105): AlphaMissenseR, AMARETTO, atSNP, autonomics, BayesSpace, bedbaser, BiocBuildReporter, BiocCheck, BiocHail, BiocPkgTools, biomaRt, BioPlex, brendaDb, bugphyzz, bugsigdbr, BulkSignalR, cbaf, cBioPortalData, CBNplot, CellBench, convertid, CTDquerier, curatedBreastData, customCMPdb, CytoPipeline, DeconvoBuddies, depmap, DNAZooData, drugTargetInteractions, easyRNASeq, enhancerHomologSearch, EnMCB, EnrichmentBrowser, EpiTxDb, fenr, fgga, fourDNData, GeDi, geneplast.data, GenomicScores, GenomicSuperSignature, ggkegg, GSEABenchmarkeR, gwascat, hca, HiContactsData, HPO.db, HumanRetinaLRSData, imageFeatureTCGA, iSEEindex, MBQN, MetaScope, MicrobiomeBenchmarkData, MIRit, motifbreakR, MotifPeeker, MPO.db, MsBackendMetaboLights, msPurity, NxtIRFdata, OmicsMLRepoR, ontoProc, ORFik, org.Mxanthus.db, Organism.dplyr, orthosData, OSTA.data, PANTHER.db, PhIPData, PlinkMatrix, PMScanR, postNet, psichomics, rBLAST, recount3, recountmethylation, regutools, ReUseData, RiboDiPA, rpx, scviR, sesame, SFEData, signeR, SingleCellMultiModal, SMTrackR, spacexr, SpatialExperiment, spatialLIBD, SpatialOmicsOverlay, SpliceImpactR, SpliceWiz, SurfR, tenXplore, terraTCGAdata, TFutils, tidyexposomics, tomoseqr, toppgene, tximeta, UMI4Cats, uncoverappLib, UniProt.ws, waddR, xenLite

Suggests Me (45): anndataR, AnnotationForge, bambu, Bioc.gff, BiocSet, ChIPpeakAnno, chipseqDB, CoGAPS, CRISPRseek, dominoSignal, emtdata, EMTscoreData, EpiCompare, epiRomics, fastreeR, fluentGenomics, GRaNIE, HicAggR, HiCDCPlus, HiCExperiment, HiCool, HighlyReplicatedRNASeq, ImageArray, iscream, MethReg, MethylSeqData, MetMashR, msigdb, Nebulosa, nemoR, nipalsMCIA, progeny, qsvaR, scCustomize, seqsetvis, simpleSingleCell, spatialHeatmap, structToolbox, TCGAutils, TENxBrainData, TENxPBMCData, TREG, visiumStitched, XeniumIO, zellkonverter